RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 HNRNPH3P31942 346 aaKnown RBP10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 CASP14P31944 242 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 CHRNA3P32297 505 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 ETFBP38117 255 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 CSNK1EP49674 416 aaKnown RBP10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 CCR5P51681 352 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 ATXN3P54252 364 aaPredicted RBP10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 CNTN1Q12860 1018 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 CA9Q16790 459 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 POM121L1PQ3SYA9 428 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 TDRD12Q587J7 1177 aaKnown RBP10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 AGBL4Q5VU57 503 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 FAM46CQ5VWP2 391 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 DPY19L3Q6ZPD9 716 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 PIP4P1Q86T03 277 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 TMIEQ8NEW7 156 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 OR14C36Q8NHC7 312 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 PIP4K2CQ8TBX8 421 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 SNX19Q92543 992 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 ZNF653Q96CK0 615 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 TRIM11Q96F44 468 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 ZDHHC5Q9C0B5 715 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 CEP44Q9C0F1 390 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 MAGEH1Q9H213 219 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 TNKS2Q9H2K2 1166 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 TSPY26PQ9H489 355 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 TM9SF3Q9HD45 589 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 GPATCH2LQ9NWQ4 482 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 MYO1AQ9UBC5 1043 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 NENFQ9UMX5 172 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 WASF2Q9Y6W5 498 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 FAM208BQ5VWN6 2430 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 TNRC6BQ9UPQ9 1833 aaKnown RBP10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 A0A1B0GVT2 93 aa10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 C1QTNF3-AMACRE9PGA6 284 aa10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 SLC7A4O43246 635 aa10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 LATO43561 262 aa10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 PLRG1O43660 514 aaKnown RBP10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 KDELR3O43731 214 aa10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 CREB3O43889 395 aa10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 BNIP3LO60238 219 aa10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 OPHN1O60890 802 aa10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 RAMP2O60895 175 aa10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 LRCH4O75427 683 aa10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 CD59P13987 128 aa10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 MIPP30301 263 aa10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 AFF3P51826 1226 aaKnown RBP10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 TAS2R38P59533 333 aa10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 PPP2CBP62714 309 aa10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 PPP2CAP67775 309 aa10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 POLD3Q15054 466 aaPredicted RBP10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 NFKBIBQ15653 356 aa10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 KIF19Q2TAC6 998 aa10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 CARD16Q5EG05 197 aa10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 KCNT1Q5JUK3 1230 aa10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 ERMARDQ5T6L9 678 aa10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 PIP5KL1Q5T9C9 394 aa10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 N4BP2L1Q5TBK1 243 aaPredicted RBP10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 PLPP6Q8IY26 295 aa10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 UMODL1-AS1Q8N2C9 162 aa10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 PCDH20Q8N6Y1 951 aaKnown RBP10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 ISG20Q96AZ6 181 aaKnown RBP10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 ARRDC3Q96B67 414 aa10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 CCDC114Q96M63 670 aa10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 KCTD15Q96SI1 283 aaPredicted RBP10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 EPAS1Q99814 870 aa10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 SNRNP25Q9BV90 132 aaKnown RBP10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 KLC2Q9H0B6 622 aa10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 KDM4CQ9H3R0 1056 aa10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 MRPL47Q9HD33 250 aaKnown RBP10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 PCSK1NQ9UHG2 260 aa10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 AP4E1Q9UPM8 1137 aa10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 FCF1Q9Y324 198 aaKnown RBP10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 SCINQ9Y6U3 715 aa10.48□□□□□ -0.73
CCDC88C-206ENST00000553437 PCDH15Q96QU1 1955 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 NUP205Q92621 2012 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 EIF3CLB5ME19 914 aaKnown RBP10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 RASA4BC9J798 803 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 WNT9AO14904 365 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 RASA4O43374 803 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 LEFTY1O75610 366 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 PRNPP04156 253 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 CYP1A2P05177 515 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 TPM3P06753 285 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 CEACAM1P13688 526 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 DESP17661 470 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 IL1R2P27930 398 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 HTR7P34969 479 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 PCK1P35558 622 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 DEKP35659 375 aaKnown RBP10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 GRIA4P48058 902 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 NOVA1P51513 510 aaKnown RBP10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 YBEYP58557 167 aaPredicted RBP10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 SLC14A1Q13336 389 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 ASTE1Q2TB18 679 aaPredicted RBP10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 HLA-BQ31612 363 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 ARSIQ5FYB1 569 aa10.47□□□□□ -0.73
CCDC88C-206ENST00000553437 SPECC1LQ69YQ0 1117 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms