RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 CHERPQ8IWX8 916 aaKnown RBP17.82■□□□□ 0.44
SYNE3-202ENST00000553340 LSMEM2Q8N112 164 aa17.82■□□□□ 0.44
SYNE3-202ENST00000553340 FAM156AQ8NDB6 213 aa17.82■□□□□ 0.44
SYNE3-202ENST00000553340 BEST2Q8NFU1 509 aa17.82■□□□□ 0.44
SYNE3-202ENST00000553340 TSPAN14Q8NG11 270 aa17.82■□□□□ 0.44
SYNE3-202ENST00000553340 SLC2A14Q8TDB8 520 aa17.82■□□□□ 0.44
SYNE3-202ENST00000553340 NDRG1Q92597 394 aaKnown RBP17.82■□□□□ 0.44
SYNE3-202ENST00000553340 MAML3Q96JK9 1138 aa17.82■□□□□ 0.44
SYNE3-202ENST00000553340 RHOJQ9H4E5 214 aa17.82■□□□□ 0.44
SYNE3-202ENST00000553340 CEPT1Q9Y6K0 416 aa17.82■□□□□ 0.44
SYNE3-202ENST00000553340 GOLGA8TH3BQL2 631 aa17.81■□□□□ 0.44
SYNE3-202ENST00000553340 M0QYT0 321 aa17.81■□□□□ 0.44
SYNE3-202ENST00000553340 ZBTB24O43167 697 aaPredicted RBP17.81■□□□□ 0.44
SYNE3-202ENST00000553340 CCDC166P0CW27 439 aa17.81■□□□□ 0.44
SYNE3-202ENST00000553340 CYP2B6P20813 491 aa17.81■□□□□ 0.44
SYNE3-202ENST00000553340 NOS2P35228 1153 aa17.81■□□□□ 0.44
SYNE3-202ENST00000553340 GNL1P36915 607 aaPredicted RBP17.81■□□□□ 0.44
SYNE3-202ENST00000553340 SLC12A1Q13621 1099 aa17.81■□□□□ 0.44
SYNE3-202ENST00000553340 CYTH1Q15438 398 aa17.81■□□□□ 0.44
SYNE3-202ENST00000553340 NRF1Q16656 503 aa17.81■□□□□ 0.44
SYNE3-202ENST00000553340 OTUD1Q5VV17 481 aaPredicted RBP17.81■□□□□ 0.44
SYNE3-202ENST00000553340 ZC3HC1Q86WB0 502 aaKnown RBP17.81■□□□□ 0.44
SYNE3-202ENST00000553340 FSTL5Q8N475 847 aaPredicted RBP17.81■□□□□ 0.44
SYNE3-202ENST00000553340 TRIML2Q8N7C3 387 aa17.81■□□□□ 0.44
SYNE3-202ENST00000553340 KCTD4Q8WVF5 259 aa17.81■□□□□ 0.44
SYNE3-202ENST00000553340 ATP6V1E2Q96A05 226 aa17.81■□□□□ 0.44
SYNE3-202ENST00000553340 R3HDMLQ9H3Y0 253 aa17.81■□□□□ 0.44
SYNE3-202ENST00000553340 UTP6Q9NYH9 597 aaKnown RBP17.81■□□□□ 0.44
SYNE3-202ENST00000553340 STAP1Q9ULZ2 295 aa17.81■□□□□ 0.44
SYNE3-202ENST00000553340 AP4S1Q9Y587 144 aa17.81■□□□□ 0.44
SYNE3-202ENST00000553340 ZNF638Q14966 1978 aaKnown RBP17.81■□□□□ 0.44
SYNE3-202ENST00000553340 WDR90Q96KV7 1748 aa17.81■□□□□ 0.44
SYNE3-202ENST00000553340 LMO2P25791 158 aa17.81■□□□□ 0.44
SYNE3-202ENST00000553340 ADIGQ0VDE8 80 aa17.81■□□□□ 0.44
SYNE3-202ENST00000553340 NME3Q13232 169 aa17.81■□□□□ 0.44
SYNE3-202ENST00000553340 DCTN2Q13561 401 aaKnown RBP17.81■□□□□ 0.44
SYNE3-202ENST00000553340 NPY6RQ99463 290 aa17.81■□□□□ 0.44
SYNE3-202ENST00000553340 APBA2Q99767 749 aa17.81■□□□□ 0.44
SYNE3-202ENST00000553340 CCT7Q99832 543 aa17.81■□□□□ 0.44
SYNE3-202ENST00000553340 APOL2Q9BQE5 337 aa17.81■□□□□ 0.44
SYNE3-202ENST00000553340 DNAI2Q9GZS0 605 aa17.81■□□□□ 0.44
SYNE3-202ENST00000553340 PLXNA1Q9UIW2 1896 aa17.81■□□□□ 0.44
SYNE3-202ENST00000553340 TRPC5OSA6NMA1 111 aa17.8■□□□□ 0.44
SYNE3-202ENST00000553340 NCAM2O15394 837 aa17.8■□□□□ 0.44
SYNE3-202ENST00000553340 HSPA1AP0DMV8 641 aaKnown RBP17.8■□□□□ 0.44
SYNE3-202ENST00000553340 HSPA1BP0DMV9 641 aaKnown RBP17.8■□□□□ 0.44
SYNE3-202ENST00000553340 COL6A2P12110 1019 aa17.8■□□□□ 0.44
SYNE3-202ENST00000553340 ERCC2P18074 760 aa17.8■□□□□ 0.44
SYNE3-202ENST00000553340 PSME3P61289 254 aa17.8■□□□□ 0.44
SYNE3-202ENST00000553340 TXNL4AP83876 142 aaKnown RBP17.8■□□□□ 0.44
SYNE3-202ENST00000553340 TRIM25Q14258 630 aaKnown RBP17.8■□□□□ 0.44
SYNE3-202ENST00000553340 DCAF4L1Q3SXM0 396 aa17.8■□□□□ 0.44
SYNE3-202ENST00000553340 LRRC8EQ6NSJ5 796 aa17.8■□□□□ 0.44
SYNE3-202ENST00000553340 PIGZQ86VD9 579 aa17.8■□□□□ 0.44
SYNE3-202ENST00000553340 ZSCAN18Q8TBC5 510 aaPredicted RBP17.8■□□□□ 0.44
SYNE3-202ENST00000553340 GAB3Q8WWW8 586 aa17.8■□□□□ 0.44
SYNE3-202ENST00000553340 C18orf25Q96B23 403 aaPredicted RBP17.8■□□□□ 0.44
SYNE3-202ENST00000553340 ZNF597Q96LX8 424 aa17.8■□□□□ 0.44
SYNE3-202ENST00000553340 MLPHQ9BV36 600 aaPredicted RBP17.8■□□□□ 0.44
SYNE3-202ENST00000553340 GBA3Q9H227 469 aa17.8■□□□□ 0.44
SYNE3-202ENST00000553340 SNTG2Q9NY99 539 aa17.8■□□□□ 0.44
SYNE3-202ENST00000553340 SUCOQ9UBS9 1254 aaKnown RBP17.8■□□□□ 0.44
SYNE3-202ENST00000553340 RAD54BQ9Y620 910 aa17.8■□□□□ 0.44
SYNE3-202ENST00000553340 ARHGEF37A1IGU5 675 aa17.8■□□□□ 0.44
SYNE3-202ENST00000553340 DLX3O60479 287 aa17.8■□□□□ 0.44
SYNE3-202ENST00000553340 SLC35E2BP0CK96 405 aa17.8■□□□□ 0.44
SYNE3-202ENST00000553340 ZNF23P17027 643 aa17.8■□□□□ 0.44
SYNE3-202ENST00000553340 TPH1P17752 444 aa17.8■□□□□ 0.44
SYNE3-202ENST00000553340 NMBRP28336 390 aa17.8■□□□□ 0.44
SYNE3-202ENST00000553340 AVPR1AP37288 418 aa17.8■□□□□ 0.44
SYNE3-202ENST00000553340 PPIDQ08752 370 aaKnown RBP17.8■□□□□ 0.44
SYNE3-202ENST00000553340 TTLL4Q14679 1199 aa17.8■□□□□ 0.44
SYNE3-202ENST00000553340 ITPRIPL1Q6GPH6 555 aa17.8■□□□□ 0.44
SYNE3-202ENST00000553340 CCNYL1Q8N7R7 359 aa17.8■□□□□ 0.44
SYNE3-202ENST00000553340 KDM1BQ8NB78 822 aa17.8■□□□□ 0.44
SYNE3-202ENST00000553340 CEP70Q8NHQ1 597 aa17.8■□□□□ 0.44
SYNE3-202ENST00000553340 NT5C3BQ969T7 300 aa17.8■□□□□ 0.44
SYNE3-202ENST00000553340 OSBPL11Q9BXB4 747 aa17.8■□□□□ 0.44
SYNE3-202ENST00000553340 SNX25Q9H3E2 840 aa17.8■□□□□ 0.44
SYNE3-202ENST00000553340 XPR1Q9UBH6 696 aa17.8■□□□□ 0.44
SYNE3-202ENST00000553340 RSL24D1Q9UHA3 163 aaKnown RBP17.8■□□□□ 0.44
SYNE3-202ENST00000553340 ACOT9Q9Y305 439 aa17.8■□□□□ 0.44
SYNE3-202ENST00000553340 hCG_2014768A0A024R1R8 64 aa17.79■□□□□ 0.44
SYNE3-202ENST00000553340 TARM1B6A8C7 271 aa17.79■□□□□ 0.44
SYNE3-202ENST00000553340 XPO1O14980 1071 aaKnown RBP17.79■□□□□ 0.44
SYNE3-202ENST00000553340 MTSS1O43312 755 aa17.79■□□□□ 0.44
SYNE3-202ENST00000553340 PTPN1P18031 435 aaKnown RBP17.79■□□□□ 0.44
SYNE3-202ENST00000553340 DNAJB1P25685 340 aa17.79■□□□□ 0.44
SYNE3-202ENST00000553340 ZBTB6Q15916 424 aa17.79■□□□□ 0.44
SYNE3-202ENST00000553340 GLRA4Q5JXX5 417 aa17.79■□□□□ 0.44
SYNE3-202ENST00000553340 C9orf57Q5W0N0 161 aa17.79■□□□□ 0.44
SYNE3-202ENST00000553340 TOP1MTQ969P6 601 aa17.79■□□□□ 0.44
SYNE3-202ENST00000553340 MAELQ96JY0 434 aaKnown RBP17.79■□□□□ 0.44
SYNE3-202ENST00000553340 SNX27Q96L92 541 aa17.79■□□□□ 0.44
SYNE3-202ENST00000553340 SEMA6AQ9H2E6 1030 aa17.79■□□□□ 0.44
SYNE3-202ENST00000553340 COQ10BQ9H8M1 238 aa17.79■□□□□ 0.44
SYNE3-202ENST00000553340 PIM2Q9P1W9 311 aa17.79■□□□□ 0.44
SYNE3-202ENST00000553340 TRHDEQ9UKU6 1024 aa17.79■□□□□ 0.44
SYNE3-202ENST00000553340 RNF11Q9Y3C5 154 aa17.79■□□□□ 0.44
SYNE3-202ENST00000553340 A0A0J9YVX5 310 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms