RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 PTPN11Q06124 597 aaPredicted RBP4.93□□□□□ -1.62
LIMA1-214ENST00000552783 NME3Q13232 169 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 TFDP2Q14188 446 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 PTK2BQ14289 1009 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 FSCBQ5H9T9 825 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 GLRA4Q5JXX5 417 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 C6orf10Q5SRN2 563 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 LDLRAP1Q5SW96 308 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 STXBP5Q5T5C0 1151 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 STRA8Q7Z7C7 330 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 IFNLR1Q8IU57 520 aaPredicted RBP4.93□□□□□ -1.62
LIMA1-214ENST00000552783 ALDH16A1Q8IZ83 802 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 ZNF786Q8N393 782 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 CCDC185Q8N715 623 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 CCNYQ8ND76 341 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 CANT1Q8WVQ1 401 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 SEPT1Q8WYJ6 367 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 NDRG1Q92597 394 aaKnown RBP4.93□□□□□ -1.62
LIMA1-214ENST00000552783 ABHD8Q96I13 439 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 PLEKHA8Q96JA3 519 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 CNDP1Q96KN2 507 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 PCYT2Q99447 389 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 CNPY3Q9BT09 278 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 KIAA1522Q9P206 1035 aaPredicted RBP4.93□□□□□ -1.62
LIMA1-214ENST00000552783 PRPF19Q9UMS4 504 aaKnown RBP4.93□□□□□ -1.62
LIMA1-214ENST00000552783 NME7Q9Y5B8 376 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 LAMA2P24043 3122 aaKnown RBP4.93□□□□□ -1.62
LIMA1-214ENST00000552783 RBM47A0AV96 593 aaKnown RBP4.93□□□□□ -1.62
LIMA1-214ENST00000552783 TMEM247A6NEH6 219 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 A8MU76 341 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 KCNK1O00180 336 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 KCNH1O95259 989 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 NCAM1P13591 858 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 GOT1P17174 413 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 TPH1P17752 444 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 UBA1P22314 1058 aaKnown RBP4.93□□□□□ -1.62
LIMA1-214ENST00000552783 PPARGP37231 505 aaPredicted RBP4.93□□□□□ -1.62
LIMA1-214ENST00000552783 NAMPTP43490 491 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 PITX1P78337 314 aaPredicted RBP4.93□□□□□ -1.62
LIMA1-214ENST00000552783 ENPEPQ07075 957 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 IFRD2Q12894 506 aaPredicted RBP4.93□□□□□ -1.62
LIMA1-214ENST00000552783 ART3Q13508 389 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 SEMA5AQ13591 1074 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 KIZQ2M2Z5 673 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 FAM47CQ5HY64 1035 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 ATF7IP2Q5U623 682 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 KRT80Q6KB66 452 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 EFCAB12Q6NXP0 572 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 PPP1R2P3Q6NXS1 205 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 TMEM53Q6P2H8 277 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 C16orf89Q6UX73 402 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 CHRDL2Q6WN34 429 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 CLEC14AQ86T13 490 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 SETD3Q86TU7 594 aaPredicted RBP4.93□□□□□ -1.62
LIMA1-214ENST00000552783 RAVER1Q8IY67 606 aaKnown RBP4.93□□□□□ -1.62
LIMA1-214ENST00000552783 SLC7A5P1Q8MH63 180 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 SLC15A4Q8N697 577 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 COLGALT1Q8NBJ5 622 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 OR52K1Q8NGK4 314 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 OR6B3Q8NGW1 331 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 RP9Q8TA86 221 aaKnown RBP4.93□□□□□ -1.62
LIMA1-214ENST00000552783 TFAP2CQ92754 450 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 LRRC39Q96DD0 335 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 SGF29Q96ES7 293 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 HEPHQ9BQS7 1158 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 OSBPL11Q9BXB4 747 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 NPLQ9BXD5 320 aaPredicted RBP4.93□□□□□ -1.62
LIMA1-214ENST00000552783 RMI1Q9H9A7 625 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 SPON1Q9HCB6 807 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 SACM1LQ9NTJ5 587 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 IGSF9Q9P2J2 1179 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 HESX1Q9UBX0 185 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 CPSF3Q9UKF6 684 aaKnown RBP4.93□□□□□ -1.62
LIMA1-214ENST00000552783 CNOT6Q9ULM6 557 aaKnown RBP4.93□□□□□ -1.62
LIMA1-214ENST00000552783 PADI4Q9UM07 663 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 SNX9Q9Y5X1 595 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 CDY2AQ9Y6F7 541 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 CDY1Q9Y6F8 540 aa4.93□□□□□ -1.62
LIMA1-214ENST00000552783 HTR3EA5X5Y0 456 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 SPTLC1O15269 473 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 OGTO15294 1046 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 HDAC3O15379 428 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 MAFGO15525 162 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 TRIM13O60858 407 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 IL18RAPO95256 599 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 VTNP04004 478 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 GSTT2P0CG29 244 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 GSTT2BP0CG30 244 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 HNRNPLP14866 589 aaKnown RBP eCLIP4.92□□□□□ -1.62
LIMA1-214ENST00000552783 ZNF24P17028 368 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 TPSB2P20231 275 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 NR4A1P22736 598 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 PRKCQQ04759 706 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 LAMTOR4Q0VGL1 99 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 RAB39AQ14964 217 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 TPSAB1Q15661 275 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 HSDL1Q3SXM5 330 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 TSTD2Q5T7W7 516 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 SEL1L3Q68CR1 1132 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 NCBP2-AS2Q69YL0 99 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms