RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 PLOD2O00469 737 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 HDAC3O15379 428 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 STRNO43815 780 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 TSPAN1O60635 241 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 TRPA1O75762 1119 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 BCAS2O75934 225 aaPredicted RBP5.51□□□□□ -1.53
LIMA1-212ENST00000552491 TMCC1O94876 653 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 SETSIPP0DME0 302 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 INSRRP14616 1297 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 HDCP19113 662 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 SAT1P21673 171 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 PTPN3P26045 913 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 RPL10P27635 214 aaKnown RBP5.51□□□□□ -1.53
LIMA1-212ENST00000552491 NMBRP28336 390 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 GABRB3P28472 473 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 TKTP29401 623 aaKnown RBP5.51□□□□□ -1.53
LIMA1-212ENST00000552491 CD68P34810 354 aaPredicted RBP5.51□□□□□ -1.53
LIMA1-212ENST00000552491 AVPR1AP37288 418 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 ARL4AP40617 200 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 RPL14P50914 215 aaKnown RBP5.51□□□□□ -1.53
LIMA1-212ENST00000552491 RABGGTBP53611 331 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 SNX16P57768 344 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 CREB5Q02930 508 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 ZNF460Q14592 562 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 NRF1Q16656 503 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 KIZQ2M2Z5 673 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 MGAT5BQ3V5L5 792 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 SH2D4BQ5SQS7 431 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 RARS2Q5T160 578 aaKnown RBP5.51□□□□□ -1.53
LIMA1-212ENST00000552491 TSTD2Q5T7W7 516 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 SEL1L3Q68CR1 1132 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 ZFP1Q6P2D0 407 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 C16orf89Q6UX73 402 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 TRIM67Q6ZTA4 783 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 DEFB132Q7Z7B7 95 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 ZNF410Q86VK4 478 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 ZDHHC17Q8IUH5 632 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 MFSD6LQ8IWD5 586 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 ALDH16A1Q8IZ83 802 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 PGAM4Q8N0Y7 254 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 NUP93Q8N1F7 819 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 CPSF7Q8N684 471 aaKnown RBP5.51□□□□□ -1.53
LIMA1-212ENST00000552491 LINC01465Q8N7H1 131 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 SNX31Q8N9S9 440 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 SERBP1Q8NC51 408 aaKnown RBP eCLIP5.51□□□□□ -1.53
LIMA1-212ENST00000552491 ADCY4Q8NFM4 1077 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 OR6B3Q8NGW1 331 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 RIN3Q8TB24 985 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 HMGCLL1Q8TB92 370 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 KCTD4Q8WVF5 259 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 GAB3Q8WWW8 586 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 TMA16Q96EY4 203 aaKnown RBP5.51□□□□□ -1.53
LIMA1-212ENST00000552491 VPS39Q96JC1 886 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 MRPL1Q9BYD6 325 aaKnown RBP5.51□□□□□ -1.53
LIMA1-212ENST00000552491 NFKBIZQ9BYH8 718 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 DRC3Q9H069 523 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 SPATC1LQ9H0A9 340 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 ILKAPQ9H0C8 392 aaPredicted RBP5.51□□□□□ -1.53
LIMA1-212ENST00000552491 PCDHAC1Q9H158 963 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 ZBTB26Q9HCK0 441 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 IARS2Q9NSE4 1012 aaKnown RBP5.51□□□□□ -1.53
LIMA1-212ENST00000552491 UBP1Q9NZI7 540 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 IGSF9Q9P2J2 1179 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 GMPR2Q9P2T1 348 aaKnown RBP5.51□□□□□ -1.53
LIMA1-212ENST00000552491 BCAP29Q9UHQ4 241 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 VPS28Q9UK41 221 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 ADAM28Q9UKQ2 775 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 SLC39A10Q9ULF5 831 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 VANGL2Q9ULK5 521 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 RAP2CQ9Y3L5 183 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 COPG1Q9Y678 874 aaKnown RBP5.51□□□□□ -1.53
LIMA1-212ENST00000552491 A0A0J9YVX5 310 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 KPNA7A9QM74 516 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 SPTLC1O15269 473 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 MAGEB3O15480 346 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 ZBTB24O43167 697 aaPredicted RBP5.51□□□□□ -1.53
LIMA1-212ENST00000552491 HBP1O60381 514 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 BEST1O76090 585 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 CSPG5O95196 566 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 VAPBO95292 243 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 TNFAIP8O95379 198 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 MPOP05164 745 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 FAM58BPP0C7Q3 252 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 FAM200BP0CF97 657 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 CDH2P19022 906 aaPredicted RBP5.51□□□□□ -1.53
LIMA1-212ENST00000552491 FGFR3P22607 806 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 ME2P23368 584 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 PPARGP37231 505 aaPredicted RBP5.51□□□□□ -1.53
LIMA1-212ENST00000552491 NDUFV1P49821 464 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 SULT1E1P49888 294 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 TNFAIP2Q03169 654 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 IFRD2Q12894 506 aaPredicted RBP5.51□□□□□ -1.53
LIMA1-212ENST00000552491 ZBTB17Q13105 803 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 MPP3Q13368 585 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 DPYSQ14117 519 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 SYPL2Q5VXT5 272 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 ARHGAP17Q68EM7 881 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 KCTD11Q693B1 232 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 NXNQ6DKJ4 435 aa5.51□□□□□ -1.53
LIMA1-212ENST00000552491 ZYG11AQ6WRX3 759 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms