RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 PGM1P36871 562 aa18.82■□□□□ 0.6
PRPF40B-208ENST00000548436 MLLT6P55198 1093 aaPredicted RBP18.82■□□□□ 0.6
PRPF40B-208ENST00000548436 TBCCQ15814 346 aa18.82■□□□□ 0.6
PRPF40B-208ENST00000548436 ACSBG2Q5FVE4 666 aa18.82■□□□□ 0.6
PRPF40B-208ENST00000548436 VWA5B1Q5TIE3 1220 aa18.82■□□□□ 0.6
PRPF40B-208ENST00000548436 DCLRE1BQ9H816 532 aa18.82■□□□□ 0.6
PRPF40B-208ENST00000548436 NMRAL1Q9HBL8 299 aa18.82■□□□□ 0.6
PRPF40B-208ENST00000548436 RNF186Q9NXI6 227 aa18.82■□□□□ 0.6
PRPF40B-208ENST00000548436 DNAJB4Q9UDY4 337 aa18.82■□□□□ 0.6
PRPF40B-208ENST00000548436 PLA2G4CQ9UP65 541 aa18.82■□□□□ 0.6
PRPF40B-208ENST00000548436 SCML2Q9UQR0 700 aa18.82■□□□□ 0.6
PRPF40B-208ENST00000548436 SPECC1L-ADORA2AF8WAN1 911 aa18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 EOMESO95936 686 aa18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 AHSGP02765 367 aa18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 AOC1P19801 751 aa18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 OR1G1P47890 313 aa18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 ACLYP53396 1101 aa18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 USP46P62068 366 aa18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 ANO4Q32M45 955 aa18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 NOMO2Q5JPE7 1267 aa18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 ESRP1Q6NXG1 681 aaKnown RBP18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 SLC24A5Q71RS6 500 aa18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 SERPINB11Q96P15 392 aa18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 C1QTNF1Q9BXJ1 281 aa18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 TRPV6Q9H1D0 765 aa18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 RHOJQ9H4E5 214 aa18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 NOL6Q9H6R4 1146 aaKnown RBP18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 DNAJC28Q9NX36 388 aa18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 APOBEC2Q9Y235 224 aaKnown RBP18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 PRG3Q9Y2Y8 225 aaPredicted RBP18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 PCDHB12Q9Y5F1 795 aa18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 SEC23IPQ9Y6Y8 1000 aaKnown RBP18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 PMPCBO75439 489 aa18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 SAT1P21673 171 aa18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 ARNTP27540 789 aa18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 ARCN1P48444 511 aaKnown RBP18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 GEMP55040 296 aa18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 NRG1Q02297 640 aaPredicted RBP18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 KDELC2Q7Z4H8 507 aa18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 MON1AQ86VX9 555 aa18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 DENND6AQ8IWF6 608 aa18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 NUP93Q8N1F7 819 aa18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 GIMAP7Q8NHV1 300 aa18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 SLC39A13Q96H72 371 aa18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 MRGPRX2Q96LB1 330 aa18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 ATXN3LQ9H3M9 355 aa18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 TBC1D13Q9NVG8 400 aa18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 NSMCE4AQ9NXX6 385 aa18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 CPSF2Q9P2I0 782 aaKnown RBP18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 SLC2A6Q9UGQ3 507 aa18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 SORCS3Q9UPU3 1222 aa18.81■□□□□ 0.6
PRPF40B-208ENST00000548436 PHGDHO43175 533 aaKnown RBP18.8■□□□□ 0.6
PRPF40B-208ENST00000548436 VAPBO95292 243 aa18.8■□□□□ 0.6
PRPF40B-208ENST00000548436 LMNAP02545 664 aaKnown RBP18.8■□□□□ 0.6
PRPF40B-208ENST00000548436 USP4Q13107 963 aa18.8■□□□□ 0.6
PRPF40B-208ENST00000548436 CTBP1Q13363 440 aa18.8■□□□□ 0.6
PRPF40B-208ENST00000548436 TIGD7Q6NT04 549 aaPredicted RBP18.8■□□□□ 0.6
PRPF40B-208ENST00000548436 RAPH1Q70E73 1250 aa18.8■□□□□ 0.6
PRPF40B-208ENST00000548436 DCP1BQ8IZD4 617 aaKnown RBP18.8■□□□□ 0.6
PRPF40B-208ENST00000548436 TMEM151AQ8N4L1 468 aa18.8■□□□□ 0.6
PRPF40B-208ENST00000548436 ZNF781Q8N8C0 355 aa18.8■□□□□ 0.6
PRPF40B-208ENST00000548436 FTHL17Q9BXU8 183 aa18.8■□□□□ 0.6
PRPF40B-208ENST00000548436 ABT1Q9ULW3 272 aaKnown RBP18.8■□□□□ 0.6
PRPF40B-208ENST00000548436 TLR6Q9Y2C9 796 aa18.8■□□□□ 0.6
PRPF40B-208ENST00000548436 TMEM189-UBE2V1I3L0A0 370 aa18.8■□□□□ 0.6
PRPF40B-208ENST00000548436 MAGEC1O60732 1142 aa18.8■□□□□ 0.6
PRPF40B-208ENST00000548436 SIN3BO75182 1162 aa18.8■□□□□ 0.6
PRPF40B-208ENST00000548436 SBK3P0C264 359 aa18.8■□□□□ 0.6
PRPF40B-208ENST00000548436 HADHAP40939 763 aa18.8■□□□□ 0.6
PRPF40B-208ENST00000548436 RAP1GDS1P52306 607 aa18.8■□□□□ 0.6
PRPF40B-208ENST00000548436 MPP1Q00013 466 aa18.8■□□□□ 0.6
PRPF40B-208ENST00000548436 USP10Q14694 798 aaKnown RBP18.8■□□□□ 0.6
PRPF40B-208ENST00000548436 RANBP10Q6VN20 620 aa18.8■□□□□ 0.6
PRPF40B-208ENST00000548436 CNTN4Q8IWV2 1026 aa18.8■□□□□ 0.6
PRPF40B-208ENST00000548436 ZNF683Q8IZ20 524 aa18.8■□□□□ 0.6
PRPF40B-208ENST00000548436 TTC9BQ8N6N2 239 aa18.8■□□□□ 0.6
PRPF40B-208ENST00000548436 PPHLN1Q8NEY8 458 aaKnown RBP18.8■□□□□ 0.6
PRPF40B-208ENST00000548436 N4BP2L2Q92802 583 aaPredicted RBP18.8■□□□□ 0.6
PRPF40B-208ENST00000548436 MOCOSQ96EN8 888 aa18.8■□□□□ 0.6
PRPF40B-208ENST00000548436 C1orf74Q96LT6 269 aa18.8■□□□□ 0.6
PRPF40B-208ENST00000548436 ENTPD7Q9NQZ7 604 aa18.8■□□□□ 0.6
PRPF40B-208ENST00000548436 IPO11Q9UI26 975 aaKnown RBP18.8■□□□□ 0.6
PRPF40B-208ENST00000548436 TCAF1Q9Y4C2 921 aa18.8■□□□□ 0.6
PRPF40B-208ENST00000548436 GREB1Q4ZG55 1949 aa18.79■□□□□ 0.6
PRPF40B-208ENST00000548436 WASH4PA8MWX3 477 aa18.79■□□□□ 0.6
PRPF40B-208ENST00000548436 TK2O00142 265 aa18.79■□□□□ 0.6
PRPF40B-208ENST00000548436 TRIM13O60858 407 aa18.79■□□□□ 0.6
PRPF40B-208ENST00000548436 KRT36O76013 467 aa18.79■□□□□ 0.6
PRPF40B-208ENST00000548436 ELF1P32519 619 aa18.79■□□□□ 0.6
PRPF40B-208ENST00000548436 AVPR1AP37288 418 aa18.79■□□□□ 0.6
PRPF40B-208ENST00000548436 CHRNA4P43681 627 aa18.79■□□□□ 0.6
PRPF40B-208ENST00000548436 PTDSS1P48651 473 aaKnown RBP18.79■□□□□ 0.6
PRPF40B-208ENST00000548436 FAM189BP81408 668 aa18.79■□□□□ 0.6
PRPF40B-208ENST00000548436 MSANTD2Q6P1R3 559 aa18.79■□□□□ 0.6
PRPF40B-208ENST00000548436 POTEHQ6S545 545 aa18.79■□□□□ 0.6
PRPF40B-208ENST00000548436 RNF180Q86T96 592 aa18.79■□□□□ 0.6
PRPF40B-208ENST00000548436 SLC41A1Q8IVJ1 513 aa18.79■□□□□ 0.6
PRPF40B-208ENST00000548436 CCDC117Q8IWD4 279 aaPredicted RBP18.79■□□□□ 0.6
PRPF40B-208ENST00000548436 MFSD6LQ8IWD5 586 aa18.79■□□□□ 0.6
PRPF40B-208ENST00000548436 GPR152Q8TDT2 470 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms