RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 VCX3BQ9H321 246 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 WDCPQ9H6R7 721 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 CDH9Q9ULB4 789 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 ARHGAP26Q9UNA1 814 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 GIT1Q9Y2X7 761 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 PCDHB12Q9Y5F1 795 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 GOLGA8QA0A0J9YX86 632 aa12.73□□□□□ -0.37
RNF4-222ENST00000541204 A0A1B0GVG6 124 aa12.73□□□□□ -0.37
RNF4-222ENST00000541204 CCDC78A2IDD5 438 aa12.73□□□□□ -0.37
RNF4-222ENST00000541204 GOLGA8OA6NCC3 632 aa12.73□□□□□ -0.37
RNF4-222ENST00000541204 FAM155AB1AL88 458 aaPredicted RBP12.73□□□□□ -0.37
RNF4-222ENST00000541204 GOLGA8NF8WBI6 632 aa12.73□□□□□ -0.37
RNF4-222ENST00000541204 SEPT4O43236 478 aa12.73□□□□□ -0.37
RNF4-222ENST00000541204 KPNA6O60684 536 aa12.73□□□□□ -0.37
RNF4-222ENST00000541204 SERPINB5P36952 375 aa12.73□□□□□ -0.37
RNF4-222ENST00000541204 KLF10Q13118 480 aa12.73□□□□□ -0.37
RNF4-222ENST00000541204 PDCD11Q14690 1871 aaKnown RBP12.73□□□□□ -0.37
RNF4-222ENST00000541204 LPIN1Q14693 890 aa12.73□□□□□ -0.37
RNF4-222ENST00000541204 GRAMD1BQ3KR37 738 aa12.73□□□□□ -0.37
RNF4-222ENST00000541204 GRTP1Q5TC63 336 aa12.73□□□□□ -0.37
RNF4-222ENST00000541204 FSTL4Q6MZW2 842 aa12.73□□□□□ -0.37
RNF4-222ENST00000541204 RWDD4Q6NW29 188 aaKnown RBP12.73□□□□□ -0.37
RNF4-222ENST00000541204 OR10T2Q8NGX3 314 aa12.73□□□□□ -0.37
RNF4-222ENST00000541204 ZNF669Q96BR6 464 aaPredicted RBP12.73□□□□□ -0.37
RNF4-222ENST00000541204 LENG8Q96PV6 779 aaPredicted RBP12.73□□□□□ -0.37
RNF4-222ENST00000541204 OR52B2Q96RD2 323 aa12.73□□□□□ -0.37
RNF4-222ENST00000541204 RBBP8Q99708 897 aa12.73□□□□□ -0.37
RNF4-222ENST00000541204 NAT9Q9BTE0 207 aa12.73□□□□□ -0.37
RNF4-222ENST00000541204 CNGB3Q9NQW8 809 aa12.73□□□□□ -0.37
RNF4-222ENST00000541204 CHST12Q9NRB3 414 aa12.73□□□□□ -0.37
RNF4-222ENST00000541204 CDY1Q9Y6F8 540 aa12.73□□□□□ -0.37
RNF4-222ENST00000541204 HHLA1C9JL84 531 aa12.73□□□□□ -0.37
RNF4-222ENST00000541204 G3V2L1 256 aa12.73□□□□□ -0.37
RNF4-222ENST00000541204 ODC1P11926 461 aa12.73□□□□□ -0.37
RNF4-222ENST00000541204 PRKAR2AP13861 404 aaKnown RBP12.73□□□□□ -0.37
RNF4-222ENST00000541204 PCSK1P29120 753 aa12.73□□□□□ -0.37
RNF4-222ENST00000541204 MTTPP55157 894 aa12.73□□□□□ -0.37
RNF4-222ENST00000541204 MGAT3Q09327 533 aa12.73□□□□□ -0.37
RNF4-222ENST00000541204 FSCBQ5H9T9 825 aa12.73□□□□□ -0.37
RNF4-222ENST00000541204 FBXL19Q6PCT2 694 aa12.73□□□□□ -0.37
RNF4-222ENST00000541204 KBTBD6Q86V97 674 aa12.73□□□□□ -0.37
RNF4-222ENST00000541204 ARHGAP18Q8N392 663 aa12.73□□□□□ -0.37
RNF4-222ENST00000541204 OR12D3Q9UGF7 316 aa12.73□□□□□ -0.37
RNF4-222ENST00000541204 FBXW11Q9UKB1 542 aa12.73□□□□□ -0.37
RNF4-222ENST00000541204 DCLK1O15075 740 aa12.72□□□□□ -0.37
RNF4-222ENST00000541204 ADAMTS4O75173 837 aa12.72□□□□□ -0.37
RNF4-222ENST00000541204 FBXO21O94952 628 aa12.72□□□□□ -0.37
RNF4-222ENST00000541204 RTN3O95197 1032 aaPredicted RBP12.72□□□□□ -0.37
RNF4-222ENST00000541204 GLUD2P49448 558 aa12.72□□□□□ -0.37
RNF4-222ENST00000541204 PGFP49763 221 aa12.72□□□□□ -0.37
RNF4-222ENST00000541204 SPANXN3Q5MJ09 141 aa12.72□□□□□ -0.37
RNF4-222ENST00000541204 TAC4Q86UU9 113 aa12.72□□□□□ -0.37
RNF4-222ENST00000541204 TDRD5Q8NAT2 981 aaKnown RBP12.72□□□□□ -0.37
RNF4-222ENST00000541204 USP33Q8TEY7 942 aa12.72□□□□□ -0.37
RNF4-222ENST00000541204 GCNAQ96QF7 691 aa12.72□□□□□ -0.37
RNF4-222ENST00000541204 CCDC28BQ9BUN5 200 aa12.72□□□□□ -0.37
RNF4-222ENST00000541204 G3BP2Q9UN86 482 aaKnown RBP12.72□□□□□ -0.37
RNF4-222ENST00000541204 SSX2IPQ9Y2D8 614 aa12.72□□□□□ -0.37
RNF4-222ENST00000541204 A0A096LPK6 155 aa12.72□□□□□ -0.37
RNF4-222ENST00000541204 CAPN8A6NHC0 703 aa12.72□□□□□ -0.37
RNF4-222ENST00000541204 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.72□□□□□ -0.37
RNF4-222ENST00000541204 NEMP1O14524 444 aa12.72□□□□□ -0.37
RNF4-222ENST00000541204 AIM2O14862 343 aa12.72□□□□□ -0.37
RNF4-222ENST00000541204 SPRP35270 261 aaPredicted RBP12.72□□□□□ -0.37
RNF4-222ENST00000541204 SERPINB8P50452 374 aa12.72□□□□□ -0.37
RNF4-222ENST00000541204 SREBF2Q12772 1141 aa12.72□□□□□ -0.37
RNF4-222ENST00000541204 PDK3Q15120 406 aa12.72□□□□□ -0.37
RNF4-222ENST00000541204 SDHAF4Q5VUM1 108 aa12.72□□□□□ -0.37
RNF4-222ENST00000541204 BHLHA9Q7RTU4 235 aa12.72□□□□□ -0.37
RNF4-222ENST00000541204 BNIPLQ7Z465 357 aa12.72□□□□□ -0.37
RNF4-222ENST00000541204 METTL23Q86XA0 190 aa12.72□□□□□ -0.37
RNF4-222ENST00000541204 ACVR1CQ8NER5 493 aa12.72□□□□□ -0.37
RNF4-222ENST00000541204 FERMT1Q9BQL6 677 aa12.72□□□□□ -0.37
RNF4-222ENST00000541204 WDR55Q9H6Y2 383 aaPredicted RBP12.72□□□□□ -0.37
RNF4-222ENST00000541204 ETAA1Q9NY74 926 aa12.72□□□□□ -0.37
RNF4-222ENST00000541204 RCOR3Q9P2K3 495 aaPredicted RBP12.72□□□□□ -0.37
RNF4-222ENST00000541204 TBC1D30Q9Y2I9 924 aa12.72□□□□□ -0.37
RNF4-222ENST00000541204 ZBTB24O43167 697 aaPredicted RBP12.71□□□□□ -0.37
RNF4-222ENST00000541204 MSI1O43347 362 aaKnown RBP12.71□□□□□ -0.37
RNF4-222ENST00000541204 CA12O43570 354 aa12.71□□□□□ -0.37
RNF4-222ENST00000541204 CHRNGP07510 517 aa12.71□□□□□ -0.37
RNF4-222ENST00000541204 MAGEA12P43365 314 aa12.71□□□□□ -0.37
RNF4-222ENST00000541204 NUDT2P50583 147 aa12.71□□□□□ -0.37
RNF4-222ENST00000541204 LIMK2P53671 638 aa12.71□□□□□ -0.37
RNF4-222ENST00000541204 FOLH1Q04609 750 aa12.71□□□□□ -0.37
RNF4-222ENST00000541204 HSP90AA5PQ58FG0 334 aa12.71□□□□□ -0.37
RNF4-222ENST00000541204 RAB41Q5JT25 222 aa12.71□□□□□ -0.37
RNF4-222ENST00000541204 PPM1LQ5SGD2 360 aa12.71□□□□□ -0.37
RNF4-222ENST00000541204 OVOS1Q6IE37 1185 aa12.71□□□□□ -0.37
RNF4-222ENST00000541204 ISLR2Q6UXK2 745 aa12.71□□□□□ -0.37
RNF4-222ENST00000541204 DNAAF3Q8N9W5 541 aa12.71□□□□□ -0.37
RNF4-222ENST00000541204 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.71□□□□□ -0.37
RNF4-222ENST00000541204 ICA1LQ8NDH6 482 aa12.71□□□□□ -0.37
RNF4-222ENST00000541204 RTKNQ9BST9 563 aa12.71□□□□□ -0.37
RNF4-222ENST00000541204 DMAP1Q9NPF5 467 aaPredicted RBP12.71□□□□□ -0.37
RNF4-222ENST00000541204 TCF7L2Q9NQB0 619 aa12.71□□□□□ -0.37
RNF4-222ENST00000541204 SFMBT1Q9UHJ3 866 aa12.71□□□□□ -0.37
RNF4-222ENST00000541204 A0A0U1RQF3 1178 aa12.71□□□□□ -0.38
RNF4-222ENST00000541204 B4GALT3O60512 393 aa12.71□□□□□ -0.38
RNF4-222ENST00000541204 LRIG2O94898 1065 aa12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms