RNA–Protein interactions for RNA: ENST00000541005.1

LTBR-208, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 583 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-208ENST00000541005 TC2NQ8N9U0 490 aa13.38□□□□□ -0.27
LTBR-208ENST00000541005 ZNF564Q8TBZ8 553 aaPredicted RBP13.38□□□□□ -0.27
LTBR-208ENST00000541005 PACSIN1Q9BY11 444 aa13.38□□□□□ -0.27
LTBR-208ENST00000541005 LRRC19Q9H756 370 aa13.38□□□□□ -0.27
LTBR-208ENST00000541005 CAPN10Q9HC96 672 aa13.38□□□□□ -0.27
LTBR-208ENST00000541005 SUSD2Q9UGT4 822 aa13.38□□□□□ -0.27
LTBR-208ENST00000541005 CDV3Q9UKY7 258 aaKnown RBP13.38□□□□□ -0.27
LTBR-208ENST00000541005 HPCAL4Q9UM19 191 aa13.38□□□□□ -0.27
LTBR-208ENST00000541005 NCKAP1Q9Y2A7 1128 aa13.38□□□□□ -0.27
LTBR-208ENST00000541005 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.38□□□□□ -0.27
LTBR-208ENST00000541005 ATXN2Q99700 1313 aaKnown RBP13.38□□□□□ -0.27
LTBR-208ENST00000541005 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.37□□□□□ -0.27
LTBR-208ENST00000541005 A0A1W2PP55 124 aa13.37□□□□□ -0.27
LTBR-208ENST00000541005 MEI4A8MW99 385 aa13.37□□□□□ -0.27
LTBR-208ENST00000541005 PATE3B3GLJ2 98 aa13.37□□□□□ -0.27
LTBR-208ENST00000541005 C1QTNF3-AMACRE9PGA6 284 aa13.37□□□□□ -0.27
LTBR-208ENST00000541005 MYO1FO00160 1098 aa13.37□□□□□ -0.27
LTBR-208ENST00000541005 SLC30A4O14863 429 aa13.37□□□□□ -0.27
LTBR-208ENST00000541005 IL1BP01584 269 aa13.37□□□□□ -0.27
LTBR-208ENST00000541005 CTSLP07711 333 aa13.37□□□□□ -0.27
LTBR-208ENST00000541005 SERPINF2P08697 491 aa13.37□□□□□ -0.27
LTBR-208ENST00000541005 TCF4P15884 667 aa13.37□□□□□ -0.27
LTBR-208ENST00000541005 MAN1A1P33908 653 aa13.37□□□□□ -0.27
LTBR-208ENST00000541005 NDST2P52849 883 aa13.37□□□□□ -0.27
LTBR-208ENST00000541005 ADPRHP54922 357 aa13.37□□□□□ -0.27
LTBR-208ENST00000541005 SERINC3Q13530 473 aa13.37□□□□□ -0.27
LTBR-208ENST00000541005 PUM1Q14671 1186 aaKnown RBP eCLIP13.37□□□□□ -0.27
LTBR-208ENST00000541005 RSPO4Q2I0M5 234 aaPredicted RBP13.37□□□□□ -0.27
LTBR-208ENST00000541005 DCAF12L1Q5VU92 463 aa13.37□□□□□ -0.27
LTBR-208ENST00000541005 DAB2IPQ5VWQ8 1189 aa13.37□□□□□ -0.27
LTBR-208ENST00000541005 AFMIDQ63HM1 303 aa13.37□□□□□ -0.27
LTBR-208ENST00000541005 TMIEQ8NEW7 156 aa13.37□□□□□ -0.27
LTBR-208ENST00000541005 C1orf216Q8TAB5 229 aa13.37□□□□□ -0.27
LTBR-208ENST00000541005 PIP4K2CQ8TBX8 421 aa13.37□□□□□ -0.27
LTBR-208ENST00000541005 CASKIN2Q8WXE0 1202 aa13.37□□□□□ -0.27
LTBR-208ENST00000541005 HMCESQ96FZ2 354 aa13.37□□□□□ -0.27
LTBR-208ENST00000541005 BTBD6Q96KE9 485 aa13.37□□□□□ -0.27
LTBR-208ENST00000541005 CCDC42Q96M95 316 aa13.37□□□□□ -0.27
LTBR-208ENST00000541005 OMDQ99983 421 aa13.37□□□□□ -0.27
LTBR-208ENST00000541005 KLC2Q9H0B6 622 aa13.37□□□□□ -0.27
LTBR-208ENST00000541005 NEUROG2Q9H2A3 272 aa13.37□□□□□ -0.27
LTBR-208ENST00000541005 C6orf106Q9H6K1 298 aaPredicted RBP13.37□□□□□ -0.27
LTBR-208ENST00000541005 RXFP3Q9NSD7 469 aa13.37□□□□□ -0.27
LTBR-208ENST00000541005 SARDHQ9UL12 918 aa13.37□□□□□ -0.27
LTBR-208ENST00000541005 TPX2Q9ULW0 747 aaKnown RBP13.37□□□□□ -0.27
LTBR-208ENST00000541005 FARP1Q9Y4F1 1045 aaPredicted RBP13.37□□□□□ -0.27
LTBR-208ENST00000541005 RASA4BC9J798 803 aa13.36□□□□□ -0.27
LTBR-208ENST00000541005 H3BRJ5 948 aa13.36□□□□□ -0.27
LTBR-208ENST00000541005 RASA4O43374 803 aa13.36□□□□□ -0.27
LTBR-208ENST00000541005 GDF9O60383 454 aa13.36□□□□□ -0.27
LTBR-208ENST00000541005 RNASEH2AO75792 299 aaKnown RBP13.36□□□□□ -0.27
LTBR-208ENST00000541005 MTA2O94776 668 aa13.36□□□□□ -0.27
LTBR-208ENST00000541005 PROSCO94903 275 aa13.36□□□□□ -0.27
LTBR-208ENST00000541005 GSRP00390 522 aa13.36□□□□□ -0.27
LTBR-208ENST00000541005 PRNPP04156 253 aa13.36□□□□□ -0.27
LTBR-208ENST00000541005 FECHP22830 423 aa13.36□□□□□ -0.27
LTBR-208ENST00000541005 CHRNA3P32297 505 aa13.36□□□□□ -0.27
LTBR-208ENST00000541005 ID4P47928 161 aa13.36□□□□□ -0.27
LTBR-208ENST00000541005 IRX4P78413 519 aa13.36□□□□□ -0.27
LTBR-208ENST00000541005 TCEAL1Q15170 157 aa13.36□□□□□ -0.27
LTBR-208ENST00000541005 PPP6R3Q5H9R7 873 aaPredicted RBP13.36□□□□□ -0.27
LTBR-208ENST00000541005 AGBL4Q5VU57 503 aa13.36□□□□□ -0.27
LTBR-208ENST00000541005 KIAA0895LQ68EN5 471 aa13.36□□□□□ -0.27
LTBR-208ENST00000541005 DPY19L3Q6ZPD9 716 aa13.36□□□□□ -0.27
LTBR-208ENST00000541005 HDDC3Q8N4P3 179 aa13.36□□□□□ -0.27
LTBR-208ENST00000541005 OR2T34Q8NGX1 318 aa13.36□□□□□ -0.27
LTBR-208ENST00000541005 FAM71BQ8TC56 605 aa13.36□□□□□ -0.27
LTBR-208ENST00000541005 TSC1Q92574 1164 aa13.36□□□□□ -0.27
LTBR-208ENST00000541005 RTKNQ9BST9 563 aa13.36□□□□□ -0.27
LTBR-208ENST00000541005 EDEM2Q9BV94 578 aa13.36□□□□□ -0.27
LTBR-208ENST00000541005 NUSAP1Q9BXS6 441 aaKnown RBP13.36□□□□□ -0.27
LTBR-208ENST00000541005 KDM4CQ9H3R0 1056 aa13.36□□□□□ -0.27
LTBR-208ENST00000541005 ZWILCHQ9H900 591 aa13.36□□□□□ -0.27
LTBR-208ENST00000541005 PDFQ9HBH1 243 aa13.36□□□□□ -0.27
LTBR-208ENST00000541005 OSGEPQ9NPF4 335 aa13.36□□□□□ -0.27
LTBR-208ENST00000541005 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.36□□□□□ -0.27
LTBR-208ENST00000541005 SPTLC3Q9NUV7 552 aa13.36□□□□□ -0.27
LTBR-208ENST00000541005 CWC15Q9P013 229 aaKnown RBP13.36□□□□□ -0.27
LTBR-208ENST00000541005 CTTNBP2NLQ9P2B4 639 aa13.36□□□□□ -0.27
LTBR-208ENST00000541005 RCOR3Q9P2K3 495 aaPredicted RBP13.36□□□□□ -0.27
LTBR-208ENST00000541005 INTUQ9ULD6 942 aa13.36□□□□□ -0.27
LTBR-208ENST00000541005 SLC6A14Q9UN76 642 aa13.36□□□□□ -0.27
LTBR-208ENST00000541005 FCF1Q9Y324 198 aaKnown RBP13.36□□□□□ -0.27
LTBR-208ENST00000541005 WASF2Q9Y6W5 498 aa13.36□□□□□ -0.27
LTBR-208ENST00000541005 A0A1B0GTW7 788 aa13.35□□□□□ -0.27
LTBR-208ENST00000541005 LRRC72A6NJI9 287 aa13.35□□□□□ -0.27
LTBR-208ENST00000541005 PLRG1O43660 514 aaKnown RBP13.35□□□□□ -0.27
LTBR-208ENST00000541005 LCA5LO95447 670 aa13.35□□□□□ -0.27
LTBR-208ENST00000541005 IGHV4-34P06331 123 aa13.35□□□□□ -0.27
LTBR-208ENST00000541005 RARAP10276 462 aa13.35□□□□□ -0.27
LTBR-208ENST00000541005 GNSP15586 552 aa13.35□□□□□ -0.27
LTBR-208ENST00000541005 ERCC2P18074 760 aa13.35□□□□□ -0.27
LTBR-208ENST00000541005 RECQLP46063 649 aaPredicted RBP13.35□□□□□ -0.27
LTBR-208ENST00000541005 CCR5P51681 352 aa13.35□□□□□ -0.27
LTBR-208ENST00000541005 METAP1P53582 386 aa13.35□□□□□ -0.27
LTBR-208ENST00000541005 SMTNL2Q2TAL5 461 aa13.35□□□□□ -0.27
LTBR-208ENST00000541005 INO80DQ53TQ3 878 aaPredicted RBP13.35□□□□□ -0.27
LTBR-208ENST00000541005 CARD16Q5EG05 197 aa13.35□□□□□ -0.27
LTBR-208ENST00000541005 KCNT1Q5JUK3 1230 aa13.35□□□□□ -0.27
LTBR-208ENST00000541005 PIP5KL1Q5T9C9 394 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms