RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 ROBO3Q96MS0 1386 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 POLR1CO15160 346 aaPredicted RBP11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 WEE2P0C1S8 567 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 GPX6P59796 221 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 DSG4Q86SJ6 1040 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 ADCK1Q86TW2 530 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 LILRA2Q8N149 483 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 TFB1MQ8WVM0 346 aaKnown RBP11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 FIG4Q92562 907 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 ZNF560Q96MR9 790 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 PARVAQ9NVD7 372 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 SIRPGQ9P1W8 387 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 PCDHGA8Q9Y5G5 932 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 LINC00854A0A1B0GVQ3 168 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 K7ENM7 598 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 DCXO43602 365 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 RFPL2O75678 378 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 ENO3P13929 434 aaPredicted RBP11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 NUDT1P36639 197 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 MTMR1Q13613 665 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 STILQ15468 1287 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 CARTPTQ16568 116 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 ATG14Q6ZNE5 492 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 DNERQ8NFT8 737 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 PXYLP1Q8TE99 480 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 MTMR9Q96QG7 549 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 SNX18Q96RF0 628 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 SLC4A5Q9BY07 1137 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 MKRN2Q9H000 416 aaKnown RBP11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 CLPBQ9H078 707 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 VRTNQ9H8Y1 702 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 NANOGQ9H9S0 305 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 PLEKHA5Q9HAU0 1116 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 RPRD1BQ9NQG5 326 aaKnown RBP11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 KIAA0100Q14667 2235 aaKnown RBP11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 C7orf72A4D263 438 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 ZW10O43264 779 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 PSTPIP1O43586 416 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 PQBP1O60828 265 aaKnown RBP11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 JRKO75564 520 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 XRCC1P18887 633 aaPredicted RBP11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 TGM1P22735 817 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 CASP4P49662 377 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 ZNF135P52742 658 aaPredicted RBP11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 RPS6P62753 249 aaKnown RBP11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 NPTX1Q15818 432 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 LRIT3Q3SXY7 679 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 KIAA0408Q6ZU52 694 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 SLC26A11Q86WA9 606 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 SLC4A11Q8NBS3 891 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 BRSK1Q8TDC3 778 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 CIB1Q99828 191 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 ACAT2Q9BWD1 397 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 B3GNT4Q9C0J1 378 aa11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 SEPT9Q9UHD8 586 aaPredicted RBP11.04□□□□□ -0.64
CLSTN3-207ENST00000537408 A0A1W2PQ72 361 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 BPGMP07738 259 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 FGFR3P22607 806 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 GRIK1P39086 918 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 EVX2Q03828 476 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 WDR44Q5JSH3 913 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 TRAF7Q6Q0C0 670 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 ARMCX2Q7L311 632 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 HERC6Q8IVU3 1022 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 PARP8Q8N3A8 854 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 UBR7Q8N806 425 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 ZSWIM2Q8NEG5 633 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 CYGBQ8WWM9 190 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 TRIB2Q92519 343 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 FAM167AQ96KS9 214 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 FAM20AQ96MK3 541 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 CITED4Q96RK1 184 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 UPF3AQ9H1J1 476 aaKnown RBP11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 PCDH9Q9HC56 1237 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 VANGL2Q9ULK5 521 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 PCDHA2Q9Y5H9 948 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 ANKRD36CQ5JPF3 1778 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 SAC3D1A6NKF1 404 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 SERPINI2O75830 405 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 BCAS2O75934 225 aaPredicted RBP11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 ATF7P17544 494 aaPredicted RBP11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 CCNCP24863 283 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 DSTNP60981 165 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 SELPLGQ14242 412 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 INAVAQ3KP66 663 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 ZFP69Q49AA0 526 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 TEX44Q53QW1 395 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 RNASEH2BQ5TBB1 312 aaKnown RBP11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 AGAP9Q5VTM2 703 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 FKBP9P1Q75LS8 142 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 TMEM102Q8N9M5 508 aaPredicted RBP11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 MZB1Q8WU39 189 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 HTRA1Q92743 480 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 YTHDF1Q9BYJ9 559 aaKnown RBP11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 SLA2Q9H6Q3 261 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 GPN2Q9H9Y4 310 aaPredicted RBP11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 MORF4L1Q9UBU8 362 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 EIF3LQ9Y262 564 aaKnown RBP11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 WBP11Q9Y2W2 641 aaKnown RBP11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms