RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 APBA2Q99767 749 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 OXCT2Q9BYC2 517 aaPredicted RBP10.78□□□□□ -0.68
CLIP1-209ENST00000537178 ZMYM5Q9UJ78 669 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 RPS6KA6Q9UK32 745 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 TSPAN3O60637 253 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 CELF2O95319 508 aaKnown RBP10.78□□□□□ -0.68
CLIP1-209ENST00000537178 PIGNO95427 931 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 PROCP04070 461 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 CXCL8P10145 99 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 RPL14P50914 215 aaKnown RBP10.78□□□□□ -0.68
CLIP1-209ENST00000537178 NAA20P61599 178 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 ACOX1Q15067 660 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 ARMC12Q5T9G4 340 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 COLGALT2Q8IYK4 626 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 TBL1YQ9BQ87 522 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 TBCDQ9BTW9 1192 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 PRDM8Q9NQV8 689 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 NINJ2Q9NZG7 142 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 C3orf18Q9UK00 162 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 NCKAP1Q9Y2A7 1128 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 NID2Q14112 1375 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 SGTAO43765 313 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 ACSL4O60488 711 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 RTN3O95197 1032 aaPredicted RBP10.78□□□□□ -0.68
CLIP1-209ENST00000537178 KCNH1O95259 989 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 LTFP02788 710 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 FBXO42Q6P3S6 717 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 AGMOQ6ZNB7 445 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 ATL1Q8WXF7 558 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 POP5Q969H6 163 aaKnown RBP10.78□□□□□ -0.68
CLIP1-209ENST00000537178 DNAJC1Q96KC8 554 aaKnown RBP10.78□□□□□ -0.68
CLIP1-209ENST00000537178 SPACA7Q96KW9 195 aa10.78□□□□□ -0.68
CLIP1-209ENST00000537178 TNS3Q68CZ2 1445 aa10.77□□□□□ -0.68
CLIP1-209ENST00000537178 CCDC130P13994 396 aa10.77□□□□□ -0.68
CLIP1-209ENST00000537178 AMPD1P23109 780 aa10.77□□□□□ -0.68
CLIP1-209ENST00000537178 NDST1P52848 882 aa10.77□□□□□ -0.68
CLIP1-209ENST00000537178 EN1Q05925 392 aaPredicted RBP10.77□□□□□ -0.68
CLIP1-209ENST00000537178 PUDPQ08623 228 aa10.77□□□□□ -0.68
CLIP1-209ENST00000537178 ADIGQ0VDE8 80 aa10.77□□□□□ -0.68
CLIP1-209ENST00000537178 RRP1BQ14684 758 aaKnown RBP10.77□□□□□ -0.68
CLIP1-209ENST00000537178 Q4G0T1 1027 aa10.77□□□□□ -0.68
CLIP1-209ENST00000537178 NEPROQ6NW34 567 aa10.77□□□□□ -0.68
CLIP1-209ENST00000537178 BHLHB9Q6PI77 547 aa10.77□□□□□ -0.68
CLIP1-209ENST00000537178 B3GNT6Q6ZMB0 384 aa10.77□□□□□ -0.68
CLIP1-209ENST00000537178 TXNRD3Q86VQ6 643 aa10.77□□□□□ -0.68
CLIP1-209ENST00000537178 DEPDC4Q8N2C3 294 aa10.77□□□□□ -0.68
CLIP1-209ENST00000537178 ZSCAN18Q8TBC5 510 aaPredicted RBP10.77□□□□□ -0.68
CLIP1-209ENST00000537178 STAG3L4Q8TBR4 150 aa10.77□□□□□ -0.68
CLIP1-209ENST00000537178 SELENOMQ8WWX9 145 aa10.77□□□□□ -0.68
CLIP1-209ENST00000537178 ELOVL4Q9GZR5 314 aa10.77□□□□□ -0.68
CLIP1-209ENST00000537178 POMKQ9H5K3 350 aa10.77□□□□□ -0.68
CLIP1-209ENST00000537178 CDHR5Q9HBB8 845 aa10.77□□□□□ -0.68
CLIP1-209ENST00000537178 TMEM138Q9NPI0 162 aa10.77□□□□□ -0.68
CLIP1-209ENST00000537178 ATRNO75882 1429 aa10.77□□□□□ -0.68
CLIP1-209ENST00000537178 H3BRB1 525 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 KCNK1O00180 336 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 HAT1O14929 419 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 ANXA5P08758 320 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 PAEPP09466 180 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 TGFB3P10600 412 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 PRG2P13727 222 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 ITGADQ13349 1161 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 RGS21Q2M5E4 152 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 CBWD6Q4V339 395 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 CDKAL1Q5VV42 579 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 PALB2Q86YC2 1186 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 NKAPQ8N5F7 415 aaKnown RBP10.77□□□□□ -0.69
CLIP1-209ENST00000537178 HASPINQ8TF76 798 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 CPB2Q96IY4 423 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 TUT1Q9H6E5 874 aaKnown RBP10.77□□□□□ -0.69
CLIP1-209ENST00000537178 CLN6Q9NWW5 311 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 UXTQ9UBK9 157 aaPredicted RBP10.77□□□□□ -0.69
CLIP1-209ENST00000537178 MRPS7Q9Y2R9 242 aaKnown RBP10.77□□□□□ -0.69
CLIP1-209ENST00000537178 MYH6P13533 1939 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 CASTOR2A6NHX0 329 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 APOC4-APOC2K7ER74 178 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 APOC2P02655 101 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 YBX3P16989 372 aaKnown RBP eCLIP10.77□□□□□ -0.69
CLIP1-209ENST00000537178 RPL3P39023 403 aaKnown RBP10.77□□□□□ -0.69
CLIP1-209ENST00000537178 BCAP31P51572 246 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 BACE1P56817 501 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 MRPS22P82650 360 aaKnown RBP10.77□□□□□ -0.69
CLIP1-209ENST00000537178 FAAP100Q0VG06 881 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 LAMTOR4Q0VGL1 99 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 SFRP1Q8N474 314 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 SPATA20Q8TB22 786 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 SLC38A2Q96QD8 506 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 FAIM2Q9BWQ8 316 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 CEP41Q9BYV8 373 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 ARMCX1Q9P291 453 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 MCM8Q9UJA3 840 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 TMCO1Q9UM00 188 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 DISP2A7MBM2 1401 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 MEGF6O75095 1541 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 CCDC162PA2VCL2 907 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 KPNA3O00505 521 aaPredicted RBP10.77□□□□□ -0.69
CLIP1-209ENST00000537178 ITGA2P17301 1181 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 SERPINA4P29622 427 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 ADSSP30520 456 aa10.77□□□□□ -0.69
CLIP1-209ENST00000537178 RPL21P46778 160 aaKnown RBP10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms