RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 NUMA1Q14980 2115 aa20.24■□□□□ 0.83
CPSF1-209ENST00000532725 A0A0A6YYK5 440 aaPredicted RBP20.24■□□□□ 0.83
CPSF1-209ENST00000532725 BNIP3LO60238 219 aa20.24■□□□□ 0.83
CPSF1-209ENST00000532725 ADH1BP00325 375 aa20.24■□□□□ 0.83
CPSF1-209ENST00000532725 CTSLP07711 333 aa20.24■□□□□ 0.83
CPSF1-209ENST00000532725 KRT7P08729 469 aa20.24■□□□□ 0.83
CPSF1-209ENST00000532725 CHRNA3P32297 505 aa20.24■□□□□ 0.83
CPSF1-209ENST00000532725 SLC1A1P43005 524 aa20.24■□□□□ 0.83
CPSF1-209ENST00000532725 PSMD8P48556 350 aa20.24■□□□□ 0.83
CPSF1-209ENST00000532725 CREB5Q02930 508 aa20.24■□□□□ 0.83
CPSF1-209ENST00000532725 ZNF33AQ06730 810 aa20.24■□□□□ 0.83
CPSF1-209ENST00000532725 SFSWAPQ12872 951 aaKnown RBP20.24■□□□□ 0.83
CPSF1-209ENST00000532725 MMRN1Q13201 1228 aa20.24■□□□□ 0.83
CPSF1-209ENST00000532725 KRT81Q14533 505 aa20.24■□□□□ 0.83
CPSF1-209ENST00000532725 PDK2Q15119 407 aa20.24■□□□□ 0.83
CPSF1-209ENST00000532725 INO80DQ53TQ3 878 aaPredicted RBP20.24■□□□□ 0.83
CPSF1-209ENST00000532725 CARD16Q5EG05 197 aa20.24■□□□□ 0.83
CPSF1-209ENST00000532725 DPY19L3Q6ZPD9 716 aa20.24■□□□□ 0.83
CPSF1-209ENST00000532725 DSG4Q86SJ6 1040 aa20.24■□□□□ 0.83
CPSF1-209ENST00000532725 ZNF354CQ86Y25 554 aa20.24■□□□□ 0.83
CPSF1-209ENST00000532725 AADATQ8N5Z0 425 aa20.24■□□□□ 0.83
CPSF1-209ENST00000532725 NETO2Q8NC67 525 aa20.24■□□□□ 0.83
CPSF1-209ENST00000532725 KCTD6Q8NC69 237 aa20.24■□□□□ 0.83
CPSF1-209ENST00000532725 CHST14Q8NCH0 376 aa20.24■□□□□ 0.83
CPSF1-209ENST00000532725 TMIEQ8NEW7 156 aa20.24■□□□□ 0.83
CPSF1-209ENST00000532725 CADM4Q8NFZ8 388 aa20.24■□□□□ 0.83
CPSF1-209ENST00000532725 LUC7LQ9NQ29 371 aaKnown RBP20.24■□□□□ 0.83
CPSF1-209ENST00000532725 NCKAP1Q9Y2A7 1128 aa20.24■□□□□ 0.83
CPSF1-209ENST00000532725 FARP1Q9Y4F1 1045 aaPredicted RBP20.24■□□□□ 0.83
CPSF1-209ENST00000532725 A0A1W2PP55 124 aa20.23■□□□□ 0.83
CPSF1-209ENST00000532725 ARHGAP42A6NI28 874 aa20.23■□□□□ 0.83
CPSF1-209ENST00000532725 J3KR12 359 aa20.23■□□□□ 0.83
CPSF1-209ENST00000532725 NOP2P46087 812 aaKnown RBP20.23■□□□□ 0.83
CPSF1-209ENST00000532725 METAP1P53582 386 aa20.23■□□□□ 0.83
CPSF1-209ENST00000532725 DPYSL3Q14195 570 aa20.23■□□□□ 0.83
CPSF1-209ENST00000532725 CSRP2Q16527 193 aa20.23■□□□□ 0.83
CPSF1-209ENST00000532725 FAM46CQ5VWP2 391 aa20.23■□□□□ 0.83
CPSF1-209ENST00000532725 ARMCX6Q7L4S7 300 aa20.23■□□□□ 0.83
CPSF1-209ENST00000532725 TP53INP2Q8IXH6 220 aa20.23■□□□□ 0.83
CPSF1-209ENST00000532725 HDDC3Q8N4P3 179 aa20.23■□□□□ 0.83
CPSF1-209ENST00000532725 GPR161Q8N6U8 529 aaKnown RBP20.23■□□□□ 0.83
CPSF1-209ENST00000532725 PIP4K2CQ8TBX8 421 aa20.23■□□□□ 0.83
CPSF1-209ENST00000532725 CASKIN2Q8WXE0 1202 aa20.23■□□□□ 0.83
CPSF1-209ENST00000532725 FAM131CQ96AQ9 280 aa20.23■□□□□ 0.83
CPSF1-209ENST00000532725 CCDC114Q96M63 670 aa20.23■□□□□ 0.83
CPSF1-209ENST00000532725 BTBD1Q9H0C5 482 aa20.23■□□□□ 0.83
CPSF1-209ENST00000532725 PDFQ9HBH1 243 aa20.23■□□□□ 0.83
CPSF1-209ENST00000532725 SGK2Q9HBY8 427 aa20.23■□□□□ 0.83
CPSF1-209ENST00000532725 SEMA4GQ9NTN9 838 aa20.23■□□□□ 0.83
CPSF1-209ENST00000532725 TMEM74BQ9NUR3 256 aa20.23■□□□□ 0.83
CPSF1-209ENST00000532725 SALL4Q9UJQ4 1053 aa20.23■□□□□ 0.83
CPSF1-209ENST00000532725 METTL12A8MUP2 240 aa20.22■□□□□ 0.83
CPSF1-209ENST00000532725 RNF103O00237 685 aa20.22■□□□□ 0.83
CPSF1-209ENST00000532725 PRAMEF11O60813 436 aa20.22■□□□□ 0.83
CPSF1-209ENST00000532725 ZNF806P0C7X5 589 aa20.22■□□□□ 0.83
CPSF1-209ENST00000532725 ITPKAP23677 461 aa20.22■□□□□ 0.83
CPSF1-209ENST00000532725 DRD3P35462 400 aa20.22■□□□□ 0.83
CPSF1-209ENST00000532725 GJC1P36383 396 aa20.22■□□□□ 0.83
CPSF1-209ENST00000532725 MPLP40238 635 aa20.22■□□□□ 0.83
CPSF1-209ENST00000532725 RECQLP46063 649 aaPredicted RBP20.22■□□□□ 0.83
CPSF1-209ENST00000532725 DNA2P51530 1060 aa20.22■□□□□ 0.83
CPSF1-209ENST00000532725 CYTH1Q15438 398 aa20.22■□□□□ 0.83
CPSF1-209ENST00000532725 CCDC6Q16204 474 aa20.22■□□□□ 0.83
CPSF1-209ENST00000532725 ARSIQ5FYB1 569 aa20.22■□□□□ 0.83
CPSF1-209ENST00000532725 LRRC38Q5VT99 294 aa20.22■□□□□ 0.83
CPSF1-209ENST00000532725 LYSMD4Q5XG99 296 aa20.22■□□□□ 0.83
CPSF1-209ENST00000532725 TMCO3Q6UWJ1 677 aa20.22■□□□□ 0.83
CPSF1-209ENST00000532725 MAP7D3Q8IWC1 876 aa20.22■□□□□ 0.83
CPSF1-209ENST00000532725 ACRBPQ8NEB7 543 aa20.22■□□□□ 0.83
CPSF1-209ENST00000532725 GANCQ8TET4 914 aa20.22■□□□□ 0.83
CPSF1-209ENST00000532725 RAPGEF5Q92565 580 aa20.22■□□□□ 0.83
CPSF1-209ENST00000532725 PIGKQ92643 395 aa20.22■□□□□ 0.83
CPSF1-209ENST00000532725 FOXJ1Q92949 421 aa20.22■□□□□ 0.83
CPSF1-209ENST00000532725 VOPP1Q96AW1 172 aa20.22■□□□□ 0.83
CPSF1-209ENST00000532725 OMDQ99983 421 aa20.22■□□□□ 0.83
CPSF1-209ENST00000532725 HECAQ9UBI9 543 aaPredicted RBP20.22■□□□□ 0.83
CPSF1-209ENST00000532725 PILRBQ9UKJ0 227 aa20.22■□□□□ 0.83
CPSF1-209ENST00000532725 FZD4Q9ULV1 537 aa20.22■□□□□ 0.83
CPSF1-209ENST00000532725 ALG6Q9Y672 507 aa20.22■□□□□ 0.83
CPSF1-209ENST00000532725 WASF2Q9Y6W5 498 aa20.22■□□□□ 0.83
CPSF1-209ENST00000532725 DUSP10Q9Y6W6 482 aa20.22■□□□□ 0.83
CPSF1-209ENST00000532725 BUB1BO60566 1050 aaPredicted RBP20.21■□□□□ 0.83
CPSF1-209ENST00000532725 RNASEH2AO75792 299 aaKnown RBP20.21■□□□□ 0.83
CPSF1-209ENST00000532725 TMCC1O94876 653 aa20.21■□□□□ 0.83
CPSF1-209ENST00000532725 IPO7O95373 1038 aaKnown RBP20.21■□□□□ 0.83
CPSF1-209ENST00000532725 COMTP21964 271 aa20.21■□□□□ 0.83
CPSF1-209ENST00000532725 KDELR1P24390 212 aa20.21■□□□□ 0.83
CPSF1-209ENST00000532725 ANKRD20A8PQ5CZ79 823 aa20.21■□□□□ 0.83
CPSF1-209ENST00000532725 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP20.21■□□□□ 0.83
CPSF1-209ENST00000532725 ARHGAP36Q6ZRI8 547 aa20.21■□□□□ 0.83
CPSF1-209ENST00000532725 CYP2U1Q7Z449 544 aa20.21■□□□□ 0.83
CPSF1-209ENST00000532725 SYT12Q8IV01 421 aa20.21■□□□□ 0.83
CPSF1-209ENST00000532725 KIAA2013Q8IYS2 634 aa20.21■□□□□ 0.83
CPSF1-209ENST00000532725 PCDH19Q8TAB3 1148 aa20.21■□□□□ 0.83
CPSF1-209ENST00000532725 DNASE2BQ8WZ79 361 aa20.21■□□□□ 0.83
CPSF1-209ENST00000532725 FAF2Q96CS3 445 aa20.21■□□□□ 0.83
CPSF1-209ENST00000532725 HSPA12BQ96MM6 686 aa20.21■□□□□ 0.83
CPSF1-209ENST00000532725 HEPHQ9BQS7 1158 aa20.21■□□□□ 0.83
CPSF1-209ENST00000532725 LACRTQ9GZZ8 138 aa20.21■□□□□ 0.83
CPSF1-209ENST00000532725 PCED1AQ9H1Q7 454 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms