RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 ILVBLA1L0T0 632 aa11.6□□□□□ -0.55
VPS28-214ENST00000531032 SIGLEC6O43699 453 aa11.6□□□□□ -0.55
VPS28-214ENST00000531032 ZNF821O75541 412 aaPredicted RBP11.6□□□□□ -0.55
VPS28-214ENST00000531032 ZMPSTE24O75844 475 aa11.6□□□□□ -0.55
VPS28-214ENST00000531032 PRKCSHP14314 528 aaPredicted RBP11.6□□□□□ -0.55
VPS28-214ENST00000531032 HNRNPA2B1P22626 353 aaKnown RBP11.6□□□□□ -0.55
VPS28-214ENST00000531032 GLDCP23378 1020 aa11.6□□□□□ -0.55
VPS28-214ENST00000531032 DGKAP23743 735 aa11.6□□□□□ -0.55
VPS28-214ENST00000531032 AKT2P31751 481 aa11.6□□□□□ -0.55
VPS28-214ENST00000531032 ABCG1P45844 678 aa11.6□□□□□ -0.55
VPS28-214ENST00000531032 SERPINH1P50454 418 aaKnown RBP11.6□□□□□ -0.55
VPS28-214ENST00000531032 KCNMA1Q12791 1236 aa11.6□□□□□ -0.55
VPS28-214ENST00000531032 DPCR1Q3MIW9 517 aa11.6□□□□□ -0.55
VPS28-214ENST00000531032 TMEM259Q4ZIN3 620 aa11.6□□□□□ -0.55
VPS28-214ENST00000531032 KLHDC7AQ5VTJ3 777 aa11.6□□□□□ -0.55
VPS28-214ENST00000531032 DPY19L3Q6ZPD9 716 aa11.6□□□□□ -0.55
VPS28-214ENST00000531032 ERN2Q76MJ5 926 aaKnown RBP11.6□□□□□ -0.55
VPS28-214ENST00000531032 ARCQ7LC44 396 aa11.6□□□□□ -0.55
VPS28-214ENST00000531032 ABI3BPQ7Z7G0 1075 aa11.6□□□□□ -0.55
VPS28-214ENST00000531032 ERICH1Q86X53 443 aa11.6□□□□□ -0.55
VPS28-214ENST00000531032 OR7D4Q8NG98 312 aa11.6□□□□□ -0.55
VPS28-214ENST00000531032 OR4C6Q8NH72 309 aa11.6□□□□□ -0.55
VPS28-214ENST00000531032 GRIN3AQ8TCU5 1115 aa11.6□□□□□ -0.55
VPS28-214ENST00000531032 PPP1R16AQ96I34 528 aa11.6□□□□□ -0.55
VPS28-214ENST00000531032 BBC3Q96PG8 261 aaPredicted RBP11.6□□□□□ -0.55
VPS28-214ENST00000531032 MYOCQ99972 504 aa11.6□□□□□ -0.55
VPS28-214ENST00000531032 CEP44Q9C0F1 390 aa11.6□□□□□ -0.55
VPS28-214ENST00000531032 PDCL3Q9H2J4 239 aa11.6□□□□□ -0.55
VPS28-214ENST00000531032 TNKS2Q9H2K2 1166 aa11.6□□□□□ -0.55
VPS28-214ENST00000531032 KLHL11Q9NVR0 708 aa11.6□□□□□ -0.55
VPS28-214ENST00000531032 IL36AQ9UHA7 158 aa11.6□□□□□ -0.55
VPS28-214ENST00000531032 ZFR2Q9UPR6 939 aaKnown RBP11.6□□□□□ -0.55
VPS28-214ENST00000531032 WASF2Q9Y6W5 498 aa11.6□□□□□ -0.55
VPS28-214ENST00000531032 TLX3O43711 291 aaPredicted RBP11.59□□□□□ -0.55
VPS28-214ENST00000531032 LEFTY1O75610 366 aa11.59□□□□□ -0.55
VPS28-214ENST00000531032 PIAS2O75928 621 aa11.59□□□□□ -0.55
VPS28-214ENST00000531032 GIMD1P0DJR0 217 aa11.59□□□□□ -0.55
VPS28-214ENST00000531032 UCHL3P15374 230 aa11.59□□□□□ -0.55
VPS28-214ENST00000531032 ERCC5P28715 1186 aaPredicted RBP11.59□□□□□ -0.55
VPS28-214ENST00000531032 EIF2S3P41091 472 aaKnown RBP11.59□□□□□ -0.55
VPS28-214ENST00000531032 RECQLP46063 649 aaPredicted RBP11.59□□□□□ -0.55
VPS28-214ENST00000531032 NOMO3P69849 1222 aa11.59□□□□□ -0.55
VPS28-214ENST00000531032 INSM1Q01101 510 aaPredicted RBP11.59□□□□□ -0.55
VPS28-214ENST00000531032 SLC20A2Q08357 652 aa11.59□□□□□ -0.55
VPS28-214ENST00000531032 C2CD6Q53TS8 623 aa11.59□□□□□ -0.55
VPS28-214ENST00000531032 ARSIQ5FYB1 569 aa11.59□□□□□ -0.55
VPS28-214ENST00000531032 TAF3Q5VWG9 929 aa11.59□□□□□ -0.55
VPS28-214ENST00000531032 SEL1L3Q68CR1 1132 aa11.59□□□□□ -0.55
VPS28-214ENST00000531032 RETSATQ6NUM9 610 aa11.59□□□□□ -0.55
VPS28-214ENST00000531032 GCNT7Q6ZNI0 430 aa11.59□□□□□ -0.55
VPS28-214ENST00000531032 NOP9Q86U38 636 aaKnown RBP11.59□□□□□ -0.55
VPS28-214ENST00000531032 SLC22A18ASQ8N1D0 253 aa11.59□□□□□ -0.55
VPS28-214ENST00000531032 PCDH20Q8N6Y1 951 aaKnown RBP11.59□□□□□ -0.55
VPS28-214ENST00000531032 DCBLD1Q8N8Z6 715 aa11.59□□□□□ -0.55
VPS28-214ENST00000531032 OR13H1Q8NG92 308 aa11.59□□□□□ -0.55
VPS28-214ENST00000531032 SNIP1Q8TAD8 396 aaKnown RBP11.59□□□□□ -0.55
VPS28-214ENST00000531032 FAM174AQ8TBP5 190 aa11.59□□□□□ -0.55
VPS28-214ENST00000531032 EPS8L1Q8TE68 723 aa11.59□□□□□ -0.55
VPS28-214ENST00000531032 KLK6Q92876 244 aa11.59□□□□□ -0.55
VPS28-214ENST00000531032 IFT43Q96FT9 208 aa11.59□□□□□ -0.55
VPS28-214ENST00000531032 CRELD1Q96HD1 420 aa11.59□□□□□ -0.55
VPS28-214ENST00000531032 CFAP57Q96MR6 1250 aa11.59□□□□□ -0.55
VPS28-214ENST00000531032 DCBLD2Q96PD2 775 aa11.59□□□□□ -0.55
VPS28-214ENST00000531032 ZYG11BQ9C0D3 744 aa11.59□□□□□ -0.55
VPS28-214ENST00000531032 CLSTN2Q9H4D0 955 aa11.59□□□□□ -0.55
VPS28-214ENST00000531032 FZD3Q9NPG1 666 aa11.59□□□□□ -0.55
VPS28-214ENST00000531032 GPR27Q9NS67 375 aa11.59□□□□□ -0.55
VPS28-214ENST00000531032 UCKL1Q9NWZ5 548 aa11.59□□□□□ -0.55
VPS28-214ENST00000531032 PPARGC1AQ9UBK2 798 aaKnown RBP11.59□□□□□ -0.55
VPS28-214ENST00000531032 CLCA2Q9UQC9 943 aa11.59□□□□□ -0.55
VPS28-214ENST00000531032 AK5Q9Y6K8 562 aa11.59□□□□□ -0.55
VPS28-214ENST00000531032 CHD5Q8TDI0 1954 aa11.59□□□□□ -0.55
VPS28-214ENST00000531032 CXorf51AA0A1B0GTR3 108 aa11.58□□□□□ -0.56
VPS28-214ENST00000531032 A6NNZ2 444 aa11.58□□□□□ -0.56
VPS28-214ENST00000531032 F8VZ95 297 aa11.58□□□□□ -0.56
VPS28-214ENST00000531032 GOLGA8SH3BPF8 625 aa11.58□□□□□ -0.56
VPS28-214ENST00000531032 SRGAP2O75044 1071 aa11.58□□□□□ -0.56
VPS28-214ENST00000531032 ENDOD1O94919 500 aa11.58□□□□□ -0.56
VPS28-214ENST00000531032 PCDH8O95206 1070 aa11.58□□□□□ -0.56
VPS28-214ENST00000531032 ADRB3P13945 408 aa11.58□□□□□ -0.56
VPS28-214ENST00000531032 ITGB7P26010 798 aa11.58□□□□□ -0.56
VPS28-214ENST00000531032 NEK3P51956 506 aa11.58□□□□□ -0.56
VPS28-214ENST00000531032 ARF5P84085 180 aa11.58□□□□□ -0.56
VPS28-214ENST00000531032 E2F1Q01094 437 aa11.58□□□□□ -0.56
VPS28-214ENST00000531032 SEMG2Q02383 582 aa11.58□□□□□ -0.56
VPS28-214ENST00000531032 GNA12Q03113 381 aa11.58□□□□□ -0.56
VPS28-214ENST00000531032 HSP90AA4PQ58FG1 418 aa11.58□□□□□ -0.56
VPS28-214ENST00000531032 KIAA1161Q6NSJ0 714 aa11.58□□□□□ -0.56
VPS28-214ENST00000531032 FAM131BQ86XD5 332 aa11.58□□□□□ -0.56
VPS28-214ENST00000531032 MSANTD4Q8NCY6 345 aa11.58□□□□□ -0.56
VPS28-214ENST00000531032 SPON2Q9BUD6 331 aa11.58□□□□□ -0.56
VPS28-214ENST00000531032 CALN1Q9BXU9 219 aa11.58□□□□□ -0.56
VPS28-214ENST00000531032 STK33Q9BYT3 514 aa11.58□□□□□ -0.56
VPS28-214ENST00000531032 ATP13A1Q9HD20 1204 aa11.58□□□□□ -0.56
VPS28-214ENST00000531032 TRPM6Q9BX84 2022 aa11.58□□□□□ -0.56
VPS28-214ENST00000531032 FAM170AA1A519 330 aa11.57□□□□□ -0.56
VPS28-214ENST00000531032 FFAR2O15552 330 aa11.57□□□□□ -0.56
VPS28-214ENST00000531032 AP1G1O43747 822 aa11.57□□□□□ -0.56
VPS28-214ENST00000531032 BRINP1O60477 761 aa11.57□□□□□ -0.56
VPS28-214ENST00000531032 CD160O95971 181 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms