RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 CACNG3O60359 315 aa21.6■■□□□ 1.05
VPS28-212ENST00000530836 SYF2O95926 243 aaKnown RBP21.6■■□□□ 1.05
VPS28-212ENST00000530836 MYZAPP0CAP1 466 aa21.6■■□□□ 1.05
VPS28-212ENST00000530836 PHBP35232 272 aa21.6■■□□□ 1.05
VPS28-212ENST00000530836 TNK2Q07912 1038 aa21.6■■□□□ 1.05
VPS28-212ENST00000530836 CCDC38Q502W7 563 aa21.6■■□□□ 1.05
VPS28-212ENST00000530836 CEP85LQ5SZL2 805 aa21.6■■□□□ 1.05
VPS28-212ENST00000530836 FNBP1LQ5T0N5 605 aa21.6■■□□□ 1.05
VPS28-212ENST00000530836 ARHGAP36Q6ZRI8 547 aa21.6■■□□□ 1.05
VPS28-212ENST00000530836 CIR1Q86X95 450 aaPredicted RBP21.6■■□□□ 1.05
VPS28-212ENST00000530836 RNF135Q8IUD6 432 aa21.6■■□□□ 1.05
VPS28-212ENST00000530836 ELSPBP1Q96BH3 223 aa21.6■■□□□ 1.05
VPS28-212ENST00000530836 MYEOVQ96EZ4 313 aa21.6■■□□□ 1.05
VPS28-212ENST00000530836 ZNF599Q96NL3 588 aa21.6■■□□□ 1.05
VPS28-212ENST00000530836 CEP41Q9BYV8 373 aa21.6■■□□□ 1.05
VPS28-212ENST00000530836 CFAP97Q9P2B7 532 aa21.6■■□□□ 1.05
VPS28-212ENST00000530836 NUMBLQ9Y6R0 609 aa21.6■■□□□ 1.05
VPS28-212ENST00000530836 DOCK8Q8NF50 2099 aa21.6■■□□□ 1.05
VPS28-212ENST00000530836 GFRA2O00451 464 aa21.59■■□□□ 1.05
VPS28-212ENST00000530836 ECI2O75521 394 aa21.59■■□□□ 1.05
VPS28-212ENST00000530836 ACSL3O95573 720 aa21.59■■□□□ 1.05
VPS28-212ENST00000530836 VIPR2P41587 438 aa21.59■■□□□ 1.05
VPS28-212ENST00000530836 RPS24P62847 133 aaKnown RBP21.59■■□□□ 1.05
VPS28-212ENST00000530836 ZXDBP98169 803 aa21.59■■□□□ 1.05
VPS28-212ENST00000530836 GNA12Q03113 381 aa21.59■■□□□ 1.05
VPS28-212ENST00000530836 ZNF844Q08AG5 666 aa21.59■■□□□ 1.05
VPS28-212ENST00000530836 MPP7Q5T2T1 576 aa21.59■■□□□ 1.05
VPS28-212ENST00000530836 ZNF354CQ86Y25 554 aa21.59■■□□□ 1.05
VPS28-212ENST00000530836 ATP11CQ8NB49 1132 aa21.59■■□□□ 1.05
VPS28-212ENST00000530836 WBP2Q969T9 261 aa21.59■■□□□ 1.05
VPS28-212ENST00000530836 E2F7Q96AV8 911 aa21.59■■□□□ 1.05
VPS28-212ENST00000530836 TMA16Q96EY4 203 aaKnown RBP21.59■■□□□ 1.05
VPS28-212ENST00000530836 RPP25Q9BUL9 199 aaKnown RBP21.59■■□□□ 1.05
VPS28-212ENST00000530836 SMG9Q9H0W8 520 aaKnown RBP21.59■■□□□ 1.05
VPS28-212ENST00000530836 TDP1Q9NUW8 608 aa21.59■■□□□ 1.05
VPS28-212ENST00000530836 A0A087WUV0 522 aaPredicted RBP21.58■■□□□ 1.05
VPS28-212ENST00000530836 LEFTY2O00292 366 aa21.58■■□□□ 1.05
VPS28-212ENST00000530836 SPAG6O75602 509 aa21.58■■□□□ 1.05
VPS28-212ENST00000530836 ANXA9O76027 345 aa21.58■■□□□ 1.05
VPS28-212ENST00000530836 SUN1O94901 812 aa21.58■■□□□ 1.05
VPS28-212ENST00000530836 PRAMEF12O95522 483 aa21.58■■□□□ 1.05
VPS28-212ENST00000530836 AP2A1O95782 977 aa21.58■■□□□ 1.05
VPS28-212ENST00000530836 ASGR2P07307 311 aa21.58■■□□□ 1.05
VPS28-212ENST00000530836 CD68P34810 354 aaPredicted RBP21.58■■□□□ 1.05
VPS28-212ENST00000530836 MAGEA3P43357 314 aa21.58■■□□□ 1.05
VPS28-212ENST00000530836 GAD2Q05329 585 aa21.58■■□□□ 1.05
VPS28-212ENST00000530836 BBS9Q3SYG4 887 aa21.58■■□□□ 1.05
VPS28-212ENST00000530836 MARC1Q5VT66 337 aa21.58■■□□□ 1.05
VPS28-212ENST00000530836 LRRC8BQ6P9F7 803 aa21.58■■□□□ 1.05
VPS28-212ENST00000530836 KLHDC8BQ8IXV7 354 aa21.58■■□□□ 1.05
VPS28-212ENST00000530836 PDCD7Q8N8D1 485 aaKnown RBP21.58■■□□□ 1.05
VPS28-212ENST00000530836 ARHGEF2Q92974 986 aaKnown RBP21.58■■□□□ 1.05
VPS28-212ENST00000530836 USP13Q92995 863 aaPredicted RBP21.58■■□□□ 1.05
VPS28-212ENST00000530836 C9orf72Q96LT7 481 aa21.58■■□□□ 1.05
VPS28-212ENST00000530836 FCRL5Q96RD9 977 aa21.58■■□□□ 1.05
VPS28-212ENST00000530836 PPCSQ9HAB8 311 aa21.58■■□□□ 1.05
VPS28-212ENST00000530836 RBM22Q9NW64 420 aaKnown RBP eCLIP21.58■■□□□ 1.05
VPS28-212ENST00000530836 OBP2AQ9NY56 170 aa21.58■■□□□ 1.05
VPS28-212ENST00000530836 TCEA3O75764 348 aa21.58■■□□□ 1.04
VPS28-212ENST00000530836 IVLP07476 585 aa21.58■■□□□ 1.04
VPS28-212ENST00000530836 RHOCP08134 193 aa21.58■■□□□ 1.04
VPS28-212ENST00000530836 TCF3P15923 654 aa21.58■■□□□ 1.04
VPS28-212ENST00000530836 NFKB1P19838 968 aa21.58■■□□□ 1.04
VPS28-212ENST00000530836 STAT4Q14765 748 aa21.58■■□□□ 1.04
VPS28-212ENST00000530836 TMCO4Q5TGY1 634 aa21.58■■□□□ 1.04
VPS28-212ENST00000530836 CAND1Q86VP6 1230 aaKnown RBP21.58■■□□□ 1.04
VPS28-212ENST00000530836 SLC44A3Q8N4M1 653 aa21.58■■□□□ 1.04
VPS28-212ENST00000530836 TEX26Q8N6G2 289 aa21.58■■□□□ 1.04
VPS28-212ENST00000530836 CELF5Q8N6W0 485 aaKnown RBP21.58■■□□□ 1.04
VPS28-212ENST00000530836 CNTD1Q8N815 330 aa21.58■■□□□ 1.04
VPS28-212ENST00000530836 KIAA1958Q8N8K9 716 aa21.58■■□□□ 1.04
VPS28-212ENST00000530836 KXD1Q9BQD3 176 aa21.58■■□□□ 1.04
VPS28-212ENST00000530836 LRRC40Q9H9A6 602 aa21.58■■□□□ 1.04
VPS28-212ENST00000530836 GLOD4Q9HC38 313 aa21.58■■□□□ 1.04
VPS28-212ENST00000530836 CCL26Q9Y258 94 aa21.58■■□□□ 1.04
VPS28-212ENST00000530836 TEX264Q9Y6I9 313 aa21.58■■□□□ 1.04
VPS28-212ENST00000530836 HEPACAM2A8MVW5 462 aa21.57■■□□□ 1.04
VPS28-212ENST00000530836 TSPAN3O60637 253 aa21.57■■□□□ 1.04
VPS28-212ENST00000530836 PRAMEF11O60813 436 aa21.57■■□□□ 1.04
VPS28-212ENST00000530836 PEX11BO96011 259 aa21.57■■□□□ 1.04
VPS28-212ENST00000530836 GSTA2P09210 222 aa21.57■■□□□ 1.04
VPS28-212ENST00000530836 MSS51Q4VC12 460 aa21.57■■□□□ 1.04
VPS28-212ENST00000530836 MPPE1Q53F39 396 aa21.57■■□□□ 1.04
VPS28-212ENST00000530836 LINC00523Q86TU6 105 aa21.57■■□□□ 1.04
VPS28-212ENST00000530836 PALM2Q8IXS6 379 aa21.57■■□□□ 1.04
VPS28-212ENST00000530836 BBS5Q8N3I7 341 aa21.57■■□□□ 1.04
VPS28-212ENST00000530836 FBXO36Q8NEA4 188 aa21.57■■□□□ 1.04
VPS28-212ENST00000530836 RSPRY1Q96DX4 576 aa21.57■■□□□ 1.04
VPS28-212ENST00000530836 PLA2G2FQ9BZM2 168 aa21.57■■□□□ 1.04
VPS28-212ENST00000530836 LRRC4CQ9HCJ2 640 aa21.57■■□□□ 1.04
VPS28-212ENST00000530836 H3BQF6 201 aa21.56■■□□□ 1.04
VPS28-212ENST00000530836 OAS2P29728 719 aaKnown RBP21.56■■□□□ 1.04
VPS28-212ENST00000530836 OXCT1P55809 520 aa21.56■■□□□ 1.04
VPS28-212ENST00000530836 RFTN1Q14699 578 aaPredicted RBP21.56■■□□□ 1.04
VPS28-212ENST00000530836 FASTKD3Q14CZ7 662 aaKnown RBP21.56■■□□□ 1.04
VPS28-212ENST00000530836 KRT71Q3SY84 523 aa21.56■■□□□ 1.04
VPS28-212ENST00000530836 KCTD11Q693B1 232 aa21.56■■□□□ 1.04
VPS28-212ENST00000530836 CCNJLQ8IV13 435 aa21.56■■□□□ 1.04
VPS28-212ENST00000530836 CCDC117Q8IWD4 279 aaPredicted RBP21.56■■□□□ 1.04
VPS28-212ENST00000530836 MFSD6LQ8IWD5 586 aa21.56■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms