RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 FAM133BQ5BKY9 247 aaKnown RBP7.6□□□□□ -1.19
CD44-228ENST00000528455 PPP6R3Q5H9R7 873 aaPredicted RBP7.6□□□□□ -1.19
CD44-228ENST00000528455 CCDC181Q5TID7 509 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 FAM72AQ5TYM5 149 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 PIK3R6Q5UE93 754 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 MANEALQ5VSG8 457 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 SLC9A4Q6AI14 798 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 FAM72DQ6L9T8 149 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 FBXL22Q6P050 247 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 TXNDC11Q6PKC3 985 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 RFX8Q6ZV50 586 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 BBS12Q6ZW61 710 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 ZNF572Q7Z3I7 529 aaPredicted RBP7.6□□□□□ -1.19
CD44-228ENST00000528455 FAM72BQ86X60 149 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 LRRC49Q8IUZ0 686 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 ZDHHC14Q8IZN3 488 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 PYROXD2Q8N2H3 581 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 DTWD1Q8N5C7 304 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 PLD5Q8N7P1 536 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 CEP112Q8N8E3 955 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 TDRD5Q8NAT2 981 aaKnown RBP7.6□□□□□ -1.19
CD44-228ENST00000528455 MNS1Q8NEH6 495 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 PCDH19Q8TAB3 1148 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 ING5Q8WYH8 240 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 WBP2Q969T9 261 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 ELSPBP1Q96BH3 223 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 MS4A14Q96JA4 679 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 CSPG4P5Q96PW8 444 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 PSMB7Q99436 277 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 ZYG11BQ9C0D3 744 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 C12orf49Q9H741 205 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 L2HGDHQ9H9P8 463 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 SMPD4Q9NXE4 827 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 EPS15L1Q9UBC2 864 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 DRG1Q9Y295 367 aaKnown RBP7.6□□□□□ -1.19
CD44-228ENST00000528455 MRFAP1Q9Y605 127 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 RAD54BQ9Y620 910 aa7.6□□□□□ -1.19
CD44-228ENST00000528455 DOCK8Q8NF50 2099 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 GOLGA6L7A0A1B0GV03 622 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 TMEM221A6NGB7 291 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 CCDC188H7C350 402 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 M0R296 226 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 PGRMC1O00264 195 aaKnown RBP7.59□□□□□ -1.19
CD44-228ENST00000528455 APOL1O14791 398 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 TM4SF5O14894 197 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 CST8O60676 142 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 CLDN11O75508 207 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 ECI2O75521 394 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 ZNF189O75820 626 aaPredicted RBP7.59□□□□□ -1.19
CD44-228ENST00000528455 MOCS2O96007 188 aaPredicted RBP7.59□□□□□ -1.19
CD44-228ENST00000528455 FGGP02679 453 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 IRF1P10914 325 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 KRT10P13645 584 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 ERCC2P18074 760 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 TACR2P21452 398 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 TGM2P21980 687 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 GBP2P32456 591 aaPredicted RBP7.59□□□□□ -1.19
CD44-228ENST00000528455 GJC1P36383 396 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 GSK3AP49840 483 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 NDST2P52849 883 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 CDH4P55283 916 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 OXCT1P55809 520 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 YBEYP58557 167 aaPredicted RBP7.59□□□□□ -1.19
CD44-228ENST00000528455 TPI1P60174 286 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 ZNF33AQ06730 810 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 CKAP4Q07065 602 aaKnown RBP7.59□□□□□ -1.19
CD44-228ENST00000528455 SIGLEC14Q08ET2 396 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 FCHO2Q0JRZ9 810 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 XRCC4Q13426 336 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 DPYSQ14117 519 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 ZNF77Q15935 545 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 LONRF2Q1L5Z9 754 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 RABGAP1LQ5R372 815 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 RAP1GAP2Q684P5 730 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 NADSYN1Q6IA69 706 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 TANGO2Q6ICL3 276 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 DRICH1Q6PGQ1 229 aaPredicted RBP7.59□□□□□ -1.19
CD44-228ENST00000528455 MTSS1LQ765P7 747 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 CHST9Q7L1S5 443 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 BMP8AQ7Z5Y6 402 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 C14orf80Q86SX3 495 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 UBALD2Q8IYN6 164 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 PQLC3Q8N755 202 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 ZNF557Q8N988 423 aaPredicted RBP7.59□□□□□ -1.19
CD44-228ENST00000528455 BPIFB1Q8TDL5 484 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 TRAF3IP1Q8TDR0 691 aaPredicted RBP7.59□□□□□ -1.19
CD44-228ENST00000528455 OSCP1Q8WVF1 389 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 P3H4Q92791 437 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 TBC1D31Q96DN5 1066 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 FAM122AQ96E09 287 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 LRRC3BQ96PB8 259 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 MYADMQ96S97 322 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 HEMGNQ9BXL5 484 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 BRD8Q9H0E9 1235 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 KCNH6Q9H252 994 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 LINC00597Q9H2U6 94 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 LRRC19Q9H756 370 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 TMEM248Q9NWD8 314 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 GPATCH2LQ9NWQ4 482 aa7.59□□□□□ -1.19
CD44-228ENST00000528455 XPO7Q9UIA9 1087 aaKnown RBP7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms