RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 SPATA31A7Q8IWB4 1347 aa4.24□□□□□ -1.73
CD44-219ENST00000525685 KRTAP29-1A8MX34 341 aaPredicted RBP4.24□□□□□ -1.73
CD44-219ENST00000525685 E5RJQ4 531 aa4.24□□□□□ -1.73
CD44-219ENST00000525685 PPEF2O14830 753 aa4.24□□□□□ -1.73
CD44-219ENST00000525685 IGKV2-30P06310 120 aa4.24□□□□□ -1.73
CD44-219ENST00000525685 RFPL3SP0C7P2 107 aa4.24□□□□□ -1.73
CD44-219ENST00000525685 TNNT1P13805 278 aa4.24□□□□□ -1.73
CD44-219ENST00000525685 RPS6KB1P23443 525 aa4.24□□□□□ -1.73
CD44-219ENST00000525685 IDUAP35475 653 aa4.24□□□□□ -1.73
CD44-219ENST00000525685 DMWDQ09019 674 aa4.24□□□□□ -1.73
CD44-219ENST00000525685 GALNT3Q14435 633 aa4.24□□□□□ -1.73
CD44-219ENST00000525685 SEC23BQ15437 767 aa4.24□□□□□ -1.73
CD44-219ENST00000525685 ARL13AQ5H913 290 aaPredicted RBP4.24□□□□□ -1.73
CD44-219ENST00000525685 ZNF484Q5JVG2 852 aa4.24□□□□□ -1.73
CD44-219ENST00000525685 KIAA1324Q6UXG2 1013 aaKnown RBP4.24□□□□□ -1.73
CD44-219ENST00000525685 CYB5R4Q7L1T6 521 aa4.24□□□□□ -1.73
CD44-219ENST00000525685 TFAP2DQ7Z6R9 452 aa4.24□□□□□ -1.73
CD44-219ENST00000525685 ZSCAN2Q7Z7L9 614 aaPredicted RBP4.24□□□□□ -1.73
CD44-219ENST00000525685 TMEM200AQ86VY9 491 aa4.24□□□□□ -1.73
CD44-219ENST00000525685 RFX6Q8HWS3 928 aa4.24□□□□□ -1.73
CD44-219ENST00000525685 PAF1Q8N7H5 531 aa4.24□□□□□ -1.73
CD44-219ENST00000525685 PTGR2Q8N8N7 351 aaPredicted RBP4.24□□□□□ -1.73
CD44-219ENST00000525685 ENDOVQ8N8Q3 282 aaKnown RBP4.24□□□□□ -1.73
CD44-219ENST00000525685 TESK2Q96S53 571 aa4.24□□□□□ -1.73
CD44-219ENST00000525685 CHMP4AQ9BY43 222 aa4.24□□□□□ -1.73
CD44-219ENST00000525685 SPRTNQ9H040 489 aaPredicted RBP4.24□□□□□ -1.73
CD44-219ENST00000525685 ARL15Q9NXU5 204 aa4.24□□□□□ -1.73
CD44-219ENST00000525685 TUBA8Q9NY65 449 aaPredicted RBP4.24□□□□□ -1.73
CD44-219ENST00000525685 SBNO1A3KN83 1393 aa4.24□□□□□ -1.73
CD44-219ENST00000525685 MARF1Q9Y4F3 1742 aaKnown RBP4.24□□□□□ -1.73
CD44-219ENST00000525685 CACNA1IQ9P0X4 2223 aa4.23□□□□□ -1.73
CD44-219ENST00000525685 PIK3C2AO00443 1686 aa4.23□□□□□ -1.73
CD44-219ENST00000525685 USP54Q70EL1 1684 aa4.23□□□□□ -1.73
CD44-219ENST00000525685 USP6P35125 1406 aa4.23□□□□□ -1.73
CD44-219ENST00000525685 SLC22A23A1A5C7 686 aa4.23□□□□□ -1.73
CD44-219ENST00000525685 MSI1O43347 362 aaKnown RBP4.23□□□□□ -1.73
CD44-219ENST00000525685 UGDHO60701 494 aa4.23□□□□□ -1.73
CD44-219ENST00000525685 SGPL1O95470 568 aa4.23□□□□□ -1.73
CD44-219ENST00000525685 BMP15O95972 392 aa4.23□□□□□ -1.73
CD44-219ENST00000525685 WEE2P0C1S8 567 aa4.23□□□□□ -1.73
CD44-219ENST00000525685 CYP4B1P13584 511 aa4.23□□□□□ -1.73
CD44-219ENST00000525685 CHN1P15882 459 aa4.23□□□□□ -1.73
CD44-219ENST00000525685 ATP5F1P24539 256 aaPredicted RBP4.23□□□□□ -1.73
CD44-219ENST00000525685 CNTFP26441 200 aa4.23□□□□□ -1.73
CD44-219ENST00000525685 PNPLA4P41247 253 aa4.23□□□□□ -1.73
CD44-219ENST00000525685 MMP13P45452 471 aa4.23□□□□□ -1.73
CD44-219ENST00000525685 RPS13P62277 151 aaKnown RBP4.23□□□□□ -1.73
CD44-219ENST00000525685 B4GALNT1Q00973 533 aa4.23□□□□□ -1.73
CD44-219ENST00000525685 TRIP6Q15654 476 aaKnown RBP4.23□□□□□ -1.73
CD44-219ENST00000525685 TMEM95Q3KNT9 176 aa4.23□□□□□ -1.73
CD44-219ENST00000525685 LRIG3Q6UXM1 1119 aa4.23□□□□□ -1.73
CD44-219ENST00000525685 ZNF793Q6ZN11 406 aa4.23□□□□□ -1.73
CD44-219ENST00000525685 FAM57BQ71RH2 274 aa4.23□□□□□ -1.73
CD44-219ENST00000525685 RASGRP2Q7LDG7 609 aa4.23□□□□□ -1.73
CD44-219ENST00000525685 KLBQ86Z14 1044 aa4.23□□□□□ -1.73
CD44-219ENST00000525685 ADGRF3Q8IZF5 1079 aa4.23□□□□□ -1.73
CD44-219ENST00000525685 LINS1Q8NG48 757 aa4.23□□□□□ -1.73
CD44-219ENST00000525685 ZNF398Q8TD17 642 aa4.23□□□□□ -1.73
CD44-219ENST00000525685 SLC2A12Q8TD20 617 aa4.23□□□□□ -1.73
CD44-219ENST00000525685 ZBTB9Q96C00 473 aa4.23□□□□□ -1.73
CD44-219ENST00000525685 KTI12Q96EK9 354 aaPredicted RBP4.23□□□□□ -1.73
CD44-219ENST00000525685 UBXN10Q96LJ8 280 aa4.23□□□□□ -1.73
CD44-219ENST00000525685 LDHAL6BQ9BYZ2 381 aaPredicted RBP4.23□□□□□ -1.73
CD44-219ENST00000525685 ABHD16BQ9H3Z7 469 aa4.23□□□□□ -1.73
CD44-219ENST00000525685 ACAD9Q9H845 621 aa4.23□□□□□ -1.73
CD44-219ENST00000525685 MTMR4Q9NYA4 1195 aa4.23□□□□□ -1.73
CD44-219ENST00000525685 ELOVL5Q9NYP7 299 aa4.23□□□□□ -1.73
CD44-219ENST00000525685 GTF2A1LQ9UNN4 478 aa4.23□□□□□ -1.73
CD44-219ENST00000525685 LZTS1Q9Y250 596 aa4.23□□□□□ -1.73
CD44-219ENST00000525685 PLCH1Q4KWH8 1693 aa4.22□□□□□ -1.73
CD44-219ENST00000525685 ACEP12821 1306 aa4.22□□□□□ -1.73
CD44-219ENST00000525685 CPSF1Q10570 1443 aaKnown RBP4.22□□□□□ -1.73
CD44-219ENST00000525685 SSH2Q76I76 1423 aa4.22□□□□□ -1.73
CD44-219ENST00000525685 CCDC189A1A4V9 331 aa4.22□□□□□ -1.73
CD44-219ENST00000525685 RRN3P2A6NIE6 340 aa4.22□□□□□ -1.73
CD44-219ENST00000525685 FAM90A20PA6NIJ5 464 aa4.22□□□□□ -1.73
CD44-219ENST00000525685 MCIDASD6RGH6 385 aa4.22□□□□□ -1.73
CD44-219ENST00000525685 PROB1E7EW31 1015 aa4.22□□□□□ -1.73
CD44-219ENST00000525685 PEX12O00623 359 aa4.22□□□□□ -1.73
CD44-219ENST00000525685 CYP21A2P08686 494 aa4.22□□□□□ -1.73
CD44-219ENST00000525685 HSPA5P11021 654 aaKnown RBP4.22□□□□□ -1.73
CD44-219ENST00000525685 PKMP14618 531 aaKnown RBP4.22□□□□□ -1.73
CD44-219ENST00000525685 HOXB9P17482 250 aaPredicted RBP4.22□□□□□ -1.73
CD44-219ENST00000525685 XBP1P17861 261 aa4.22□□□□□ -1.73
CD44-219ENST00000525685 IGFBP2P18065 325 aa4.22□□□□□ -1.73
CD44-219ENST00000525685 HOXA7P31268 230 aaPredicted RBP4.22□□□□□ -1.73
CD44-219ENST00000525685 STAT1P42224 750 aa4.22□□□□□ -1.73
CD44-219ENST00000525685 SOX2P48431 317 aa4.22□□□□□ -1.73
CD44-219ENST00000525685 RPS6KA3P51812 740 aa4.22□□□□□ -1.73
CD44-219ENST00000525685 ID2Q02363 134 aa4.22□□□□□ -1.73
CD44-219ENST00000525685 MAPK7Q13164 816 aa4.22□□□□□ -1.73
CD44-219ENST00000525685 DCTN1Q14203 1278 aa4.22□□□□□ -1.73
CD44-219ENST00000525685 Q4G0T1 1027 aa4.22□□□□□ -1.73
CD44-219ENST00000525685 EARS2Q5JPH6 523 aaKnown RBP4.22□□□□□ -1.73
CD44-219ENST00000525685 MEX3CQ5U5Q3 659 aaKnown RBP4.22□□□□□ -1.73
CD44-219ENST00000525685 CYP26C1Q6V0L0 522 aa4.22□□□□□ -1.73
CD44-219ENST00000525685 B4GALNT4Q76KP1 1039 aa4.22□□□□□ -1.73
CD44-219ENST00000525685 LRRC59Q96AG4 307 aaKnown RBP4.22□□□□□ -1.73
CD44-219ENST00000525685 PPP1R10Q96QC0 940 aaKnown RBP4.22□□□□□ -1.73
CD44-219ENST00000525685 ZNF347Q96SE7 839 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms