RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 PPTC7Q8NI37 304 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 SKA1Q96BD8 255 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 COG4Q9H9E3 785 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 IDH3BO43837 385 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 FCGR1AP12314 374 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 CPA3P15088 417 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 ELNP15502 786 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 PAX3P23760 479 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 PLD1Q13393 1074 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 SPIDRQ14159 915 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 AHI1Q8N157 1196 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 B3GALNT2Q8NCR0 500 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 C18orf25Q96B23 403 aaPredicted RBP13.32□□□□□ -0.28
TCOF1-213ENST00000514442 SERPINB11Q96P15 392 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 RAD21L1Q9H4I0 556 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 ACSS3Q9H6R3 686 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 POLR1BQ9H9Y6 1135 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 VPS45Q9NRW7 570 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 KIF17Q9P2E2 1029 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 FADS3Q9Y5Q0 445 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 OAS1P00973 400 aaKnown RBP13.32□□□□□ -0.28
TCOF1-213ENST00000514442 MMP3P08254 477 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 TSHRP16473 764 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 ZNF23P17027 643 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 NPR3P17342 541 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 FASP25445 335 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 FLT3LGP49771 235 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 PLIN5Q00G26 463 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 SDHAF4Q5VUM1 108 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 KYAT3Q6YP21 454 aaKnown RBP13.32□□□□□ -0.28
TCOF1-213ENST00000514442 C16orf59Q7L2K0 433 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 MICU2Q8IYU8 434 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 TMEM86AQ8N2M4 240 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 PCDHB18PQ96TA0 734 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 NAT9Q9BTE0 207 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 BCAS3Q9H6U6 928 aa13.32□□□□□ -0.28
TCOF1-213ENST00000514442 NCAM2O15394 837 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 MGAT5Q09328 741 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 TRIM60Q495X7 471 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 UNC93AQ86WB7 457 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 MTMR14Q8NCE2 650 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 MRPL45Q9BRJ2 306 aaKnown RBP13.31□□□□□ -0.28
TCOF1-213ENST00000514442 ASPSCR1Q9BZE9 553 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 LRRC4CQ9HCJ2 640 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 ATP13A1Q9HD20 1204 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 PRPF19Q9UMS4 504 aaKnown RBP13.31□□□□□ -0.28
TCOF1-213ENST00000514442 ZNF232Q9UNY5 417 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 V9GYQ6 96 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 A0A0J9YVX5 310 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 ZSCAN9O15535 394 aaPredicted RBP13.31□□□□□ -0.28
TCOF1-213ENST00000514442 ZMPSTE24O75844 475 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 NME5P56597 212 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 DPYSQ14117 519 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 DUSP28Q4G0W2 176 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 ARCQ7LC44 396 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 RAB42Q8N4Z0 105 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 SNRNP25Q9BV90 132 aaKnown RBP13.31□□□□□ -0.28
TCOF1-213ENST00000514442 RUBCNLQ9H714 662 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 SCN3BQ9NY72 215 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 TUBGCP4Q9UGJ1 667 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 SLC25A13Q9UJS0 675 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 TELO2Q9Y4R8 837 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 TCRBV7S2A1N4TA0A589 114 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 SLCO1B7G3V0H7 640 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 APOA4P06727 396 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 CAPN1P07384 714 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 KLRC2P26717 231 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 TAS2R40P59535 323 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 DPYSL3Q14195 570 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 DPF3Q92784 378 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 ERLEC1Q96DZ1 483 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 WDR41Q9HAD4 459 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 PPM1HQ9ULR3 514 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 SOWAHBA6NEL2 793 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 SOAT2O75908 522 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 PBLDP30039 288 aaPredicted RBP13.31□□□□□ -0.28
TCOF1-213ENST00000514442 RAD23AP54725 363 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 DDX39BQ13838 428 aaKnown RBP13.31□□□□□ -0.28
TCOF1-213ENST00000514442 PPP1R26Q5T8A7 1209 aaPredicted RBP13.31□□□□□ -0.28
TCOF1-213ENST00000514442 PALB2Q86YC2 1186 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 HPS6Q86YV9 775 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 HERC6Q8IVU3 1022 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 ALLCQ8N6M5 410 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 S100ZQ8WXG8 99 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 WNT8BQ93098 351 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 OLFM1Q99784 485 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 C9orf16Q9BUW7 83 aa13.31□□□□□ -0.28
TCOF1-213ENST00000514442 A0A0B4J269 797 aa13.3□□□□□ -0.28
TCOF1-213ENST00000514442 LIASO43766 372 aa13.3□□□□□ -0.28
TCOF1-213ENST00000514442 ZNF143P52747 638 aaPredicted RBP13.3□□□□□ -0.28
TCOF1-213ENST00000514442 DEFB115Q30KQ5 88 aa13.3□□□□□ -0.28
TCOF1-213ENST00000514442 AKAP14Q86UN6 197 aa13.3□□□□□ -0.28
TCOF1-213ENST00000514442 DHFR2Q86XF0 187 aa13.3□□□□□ -0.28
TCOF1-213ENST00000514442 SLC7A8Q9UHI5 535 aa13.3□□□□□ -0.28
TCOF1-213ENST00000514442 PACSIN3Q9UKS6 424 aa13.3□□□□□ -0.28
TCOF1-213ENST00000514442 VPS26AO75436 327 aa13.3□□□□□ -0.28
TCOF1-213ENST00000514442 BANF1O75531 89 aa13.3□□□□□ -0.28
TCOF1-213ENST00000514442 CKBP12277 381 aa13.3□□□□□ -0.28
TCOF1-213ENST00000514442 NELFEP18615 380 aaKnown RBP13.3□□□□□ -0.28
TCOF1-213ENST00000514442 ABCG1P45844 678 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms