RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 DTLQ9NZJ0 730 aa8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 RCOR3Q9P2K3 495 aaPredicted RBP8.53□□□□□ -1.04
LIMCH1-216ENST00000512820 CXCL11O14625 94 aa8.52□□□□□ -1.04
LIMCH1-216ENST00000512820 HNRNPRO43390 633 aaKnown RBP8.52□□□□□ -1.04
LIMCH1-216ENST00000512820 GNAZP19086 355 aa8.52□□□□□ -1.04
LIMCH1-216ENST00000512820 ZNF135P52742 658 aaPredicted RBP8.52□□□□□ -1.04
LIMCH1-216ENST00000512820 SEMA5AQ13591 1074 aa8.52□□□□□ -1.04
LIMCH1-216ENST00000512820 C10orf120Q5SQS8 335 aa8.52□□□□□ -1.04
LIMCH1-216ENST00000512820 C6orf52Q5T4I8 152 aa8.52□□□□□ -1.04
LIMCH1-216ENST00000512820 C15orf39Q6ZRI6 1047 aa8.52□□□□□ -1.04
LIMCH1-216ENST00000512820 TFAP2DQ7Z6R9 452 aa8.52□□□□□ -1.04
LIMCH1-216ENST00000512820 SATL1Q86VE3 508 aa8.52□□□□□ -1.04
LIMCH1-216ENST00000512820 DCP1BQ8IZD4 617 aaKnown RBP8.52□□□□□ -1.04
LIMCH1-216ENST00000512820 ZNF567Q8N184 647 aa8.52□□□□□ -1.04
LIMCH1-216ENST00000512820 ATP6V0D2Q8N8Y2 350 aa8.52□□□□□ -1.04
LIMCH1-216ENST00000512820 AZIN2Q96A70 460 aa8.52□□□□□ -1.04
LIMCH1-216ENST00000512820 C18orf25Q96B23 403 aaPredicted RBP8.52□□□□□ -1.04
LIMCH1-216ENST00000512820 SMARCD1Q96GM5 515 aa8.52□□□□□ -1.04
LIMCH1-216ENST00000512820 OSBPL11Q9BXB4 747 aa8.52□□□□□ -1.04
LIMCH1-216ENST00000512820 SPATA16Q9BXB7 569 aa8.52□□□□□ -1.04
LIMCH1-216ENST00000512820 PDZD7Q9H5P4 517 aa8.52□□□□□ -1.04
LIMCH1-216ENST00000512820 LATS2Q9NRM7 1088 aa8.52□□□□□ -1.04
LIMCH1-216ENST00000512820 ZNF358Q9NW07 568 aa8.52□□□□□ -1.04
LIMCH1-216ENST00000512820 TUBGCP4Q9UGJ1 667 aa8.52□□□□□ -1.04
LIMCH1-216ENST00000512820 DMTF1Q9Y222 760 aa8.52□□□□□ -1.04
LIMCH1-216ENST00000512820 PKP3Q9Y446 797 aa8.52□□□□□ -1.04
LIMCH1-216ENST00000512820 CCL15-CCL14A0A0B4J2E2 113 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 ATP6AP2A0A1C7CYW4 349 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 FAM159BA6NKW6 160 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 ATP6AP2O75787 350 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 TSPAN8P19075 237 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 RENBPP51606 427 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 CCL15Q16663 113 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 LSM12Q3MHD2 195 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 ATP6AP1LQ52LC2 224 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 TREML2Q5T2D2 321 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 PTRHD1Q6GMV3 140 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 TREML1Q86YW5 311 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 HASPINQ8TF76 798 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 PTCD3Q96EY7 689 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 VTA1Q9NP79 307 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 PNPLA8Q9NP80 782 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 PDGFCQ9NRA1 345 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 STK39Q9UEW8 545 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 RAB26Q9ULW5 256 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 CRYL1Q9Y2S2 319 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 CHD4Q14839 1912 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 CACNA1SQ13698 1873 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 VPS26AO75436 327 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 ATP6V1B2P21281 511 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 XPAP23025 273 aaPredicted RBP8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 GK5Q6ZS86 529 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 PLD3Q8IV08 490 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 TMCO5AQ8N6Q1 288 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 UBR7Q8N806 425 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 MTMR14Q8NCE2 650 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 ACTRT2Q8TDY3 377 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 PPP1R13LQ8WUF5 828 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 OSCP1Q8WVF1 389 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 SENP8Q96LD8 212 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 NSMCE2Q96MF7 247 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 BDH2Q9BUT1 245 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 FZD8Q9H461 694 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 RSL24D1Q9UHA3 163 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 FBXO5Q9UKT4 447 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 E7ESA3 106 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 STX7O15400 261 aaKnown RBP8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 CDH2P19022 906 aaPredicted RBP8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 CYP2B6P20813 491 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 ADRA1BP35368 520 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 GRM3Q14832 879 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 SLC10A6Q3KNW5 377 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 TAF2Q6P1X5 1199 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 B3GNT9Q6UX72 402 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 PGAM4Q8N0Y7 254 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 FBXO39Q8N4B4 442 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 RNF145Q96MT1 663 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 APOL5Q9BWW9 433 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 DUSP16Q9BY84 665 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 TRIM54Q9BYV2 358 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 PNPLA3Q9NST1 481 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 MTF2Q9Y483 593 aaPredicted RBP8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 MYH7BA7E2Y1 1941 aa8.52□□□□□ -1.05
LIMCH1-216ENST00000512820 ZBTB24O43167 697 aaPredicted RBP8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 TADA2AO75478 443 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 TOP3BO95985 862 aaKnown RBP8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 T-ENOLP0DO92 83 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 ADORA2AP29274 412 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 AXLP30530 894 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 L1CAMP32004 1257 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 C9orf57Q5W0N0 161 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 CDHR3Q6ZTQ4 885 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 KLRG1Q96E93 195 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 PRR11Q96HE9 360 aaPredicted RBP8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 GBA2Q9HCG7 927 aaPredicted RBP8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 UTP6Q9NYH9 597 aaKnown RBP8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 VPS9D1Q9Y2B5 631 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 C2orf81A6NN90 581 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 IRF6O14896 467 aa8.51□□□□□ -1.05
LIMCH1-216ENST00000512820 AP2A1O95782 977 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms