RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 CMASQ8NFW8 434 aaPredicted RBP12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 ACTL9Q8TC94 416 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 DPF3Q92784 378 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 SLITRK1Q96PX8 696 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 SEZ6LQ9BYH1 1024 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 ING2Q9H160 280 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 DNMT3LQ9UJW3 386 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 VANGL2Q9ULK5 521 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 VPS4AQ9UN37 437 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 DRG1Q9Y295 367 aaKnown RBP12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 ROBO3Q96MS0 1386 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 TSPAN4O14817 238 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 SEC24AO95486 1093 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 CSH1P0DML2 217 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 CSH2P0DML3 217 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 RALBP11234 206 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 PKLRP30613 574 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 CYP2C18P33260 490 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 POLD2P49005 469 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 SERPINH1P50454 418 aaKnown RBP12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 MLLT6P55198 1093 aaPredicted RBP12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 ABCE1P61221 599 aaKnown RBP12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 ILF2Q12905 390 aaKnown RBP12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 ZIK1Q3SY52 487 aaPredicted RBP12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 IGSF11Q5DX21 431 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 HYIQ5T013 277 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 PIGZQ86VD9 579 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 LDHDQ86WU2 507 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 RP9Q8TA86 221 aaKnown RBP12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 SLC7A3Q8WY07 619 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 TUBA1CQ9BQE3 449 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 PLA2G12BQ9BX93 195 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 FAM96AQ9H5X1 160 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 SMYD2Q9NRG4 433 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 ZC3H7BQ9UGR2 993 aaKnown RBP12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 KIF13BQ9NQT8 1826 aa12.22□□□□□ -0.45
LIMCH1-213ENST00000511496 ARPC4-TTLL3A0A0A6YYG9 625 aa12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 A8MUA0 341 aa12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 C9IYK1 514 aa12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 TK2O00142 265 aa12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 DLGAP1O14490 977 aa12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 SEC14L2O76054 403 aa12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 TRIM16O95361 564 aa12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 ICAM2P13598 275 aa12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 CFL1P23528 166 aaKnown RBP12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 ALDH7A1P49419 539 aaKnown RBP12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 VAMP7P51809 220 aa12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 MFAP3P55082 362 aa12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 BNIP2Q12982 314 aa12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 TXNRD3NBQ6F5E7 133 aa12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 CCBE1Q6UXH8 406 aaPredicted RBP12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 MFSD4AQ8N468 514 aa12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 FBXL6Q8N531 539 aa12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 MAGEE2Q8TD90 523 aaPredicted RBP12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 METTL2AQ96IZ6 378 aaKnown RBP12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 SNX18Q96RF0 628 aa12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 SYTL2Q9HCH5 934 aa12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 E7ESA3 106 aa12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 GTF2E2P29084 291 aaKnown RBP12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 C1QBPQ07021 282 aaKnown RBP12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 BMT2Q1RMZ1 405 aa12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 SPOCD1Q6ZMY3 1216 aa12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 UNC45BQ8IWX7 931 aa12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 FAM178BQ8IXR5 827 aa12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 RCOR2Q8IZ40 523 aa12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 OR7A2PQ8NGA2 310 aa12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 GRPEL2Q8TAA5 225 aa12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 PBXIP1Q96AQ6 731 aa12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 BIRC7Q96CA5 298 aa12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 HEXIM2Q96MH2 286 aaKnown RBP12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 TBCBQ99426 244 aa12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 BBS2Q9BXC9 721 aa12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 CCDC90BQ9GZT6 254 aa12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 CCSER2Q9H7U1 834 aa12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 TEKT2Q9UIF3 430 aa12.21□□□□□ -0.45
LIMCH1-213ENST00000511496 A0A0X1KG70 313 aa12.21□□□□□ -0.46
LIMCH1-213ENST00000511496 SLC22A1O15245 554 aa12.21□□□□□ -0.46
LIMCH1-213ENST00000511496 SLC7A1P30825 629 aa12.21□□□□□ -0.46
LIMCH1-213ENST00000511496 UQCRC1P31930 480 aa12.21□□□□□ -0.46
LIMCH1-213ENST00000511496 HLCSP50747 726 aa12.21□□□□□ -0.46
LIMCH1-213ENST00000511496 NLRP11P59045 1033 aaKnown RBP12.21□□□□□ -0.46
LIMCH1-213ENST00000511496 PSME3P61289 254 aa12.21□□□□□ -0.46
LIMCH1-213ENST00000511496 FSTL1Q12841 308 aa12.21□□□□□ -0.46
LIMCH1-213ENST00000511496 SLC36A3Q495N2 470 aa12.21□□□□□ -0.46
LIMCH1-213ENST00000511496 PITRM1Q5JRX3 1037 aa12.21□□□□□ -0.46
LIMCH1-213ENST00000511496 C6orf10Q5SRN2 563 aa12.21□□□□□ -0.46
LIMCH1-213ENST00000511496 FAXCQ5TGI0 409 aa12.21□□□□□ -0.46
LIMCH1-213ENST00000511496 BROXQ5VW32 411 aa12.21□□□□□ -0.46
LIMCH1-213ENST00000511496 KCTD20Q7Z5Y7 419 aa12.21□□□□□ -0.46
LIMCH1-213ENST00000511496 SFRP1Q8N474 314 aa12.21□□□□□ -0.46
LIMCH1-213ENST00000511496 ASB9Q96DX5 294 aa12.21□□□□□ -0.46
LIMCH1-213ENST00000511496 DCAF5Q96JK2 942 aa12.21□□□□□ -0.46
LIMCH1-213ENST00000511496 DHX33Q9H6R0 707 aaKnown RBP12.21□□□□□ -0.46
LIMCH1-213ENST00000511496 EHMT1Q9H9B1 1298 aa12.21□□□□□ -0.46
LIMCH1-213ENST00000511496 TMEM216Q9P0N5 145 aa12.21□□□□□ -0.46
LIMCH1-213ENST00000511496 ACTR3BQ9P1U1 418 aa12.21□□□□□ -0.46
LIMCH1-213ENST00000511496 LRRIQ4A6NIV6 560 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 WDR64B1ANS9 1081 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 INO80B-WBP1J3KQ70 363 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 AGRPO00253 132 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms