RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 ATP13A1Q9HD20 1204 aa7.34□□□□□ -1.23
NUP54-204ENST00000506098 DNAJC17Q9NVM6 304 aaKnown RBP7.34□□□□□ -1.23
NUP54-204ENST00000506098 DEC1Q9P2X7 70 aa7.34□□□□□ -1.23
NUP54-204ENST00000506098 VPS51Q9UID3 782 aa7.34□□□□□ -1.23
NUP54-204ENST00000506098 VPS28Q9UK41 221 aa7.34□□□□□ -1.23
NUP54-204ENST00000506098 DUSP12Q9UNI6 340 aa7.34□□□□□ -1.23
NUP54-204ENST00000506098 HS3ST2Q9Y278 367 aa7.34□□□□□ -1.23
NUP54-204ENST00000506098 ATP8A1Q9Y2Q0 1164 aa7.34□□□□□ -1.23
NUP54-204ENST00000506098 STARD13Q9Y3M8 1113 aa7.34□□□□□ -1.23
NUP54-204ENST00000506098 FANCMQ8IYD8 2048 aa7.34□□□□□ -1.24
NUP54-204ENST00000506098 TECTAO75443 2155 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 SHISA7A6NL88 538 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 SPECC1L-ADORA2AF8WAN1 911 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 KCNK1O00180 336 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 CBX4O00257 560 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 TRIM24O15164 1050 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 NARSO43776 548 aaKnown RBP7.33□□□□□ -1.24
NUP54-204ENST00000506098 SNAP91O60641 907 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 OPHN1O60890 802 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 STK10O94804 968 aaKnown RBP7.33□□□□□ -1.24
NUP54-204ENST00000506098 KRT14P02533 472 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 ASGR2P07307 311 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 HNRNPLP14866 589 aaKnown RBP eCLIP7.33□□□□□ -1.24
NUP54-204ENST00000506098 POLR2EP19388 210 aaKnown RBP7.33□□□□□ -1.24
NUP54-204ENST00000506098 IVDP26440 423 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 CTHP32929 405 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 CD68P34810 354 aaPredicted RBP7.33□□□□□ -1.24
NUP54-204ENST00000506098 RPL22P35268 128 aaKnown RBP7.33□□□□□ -1.24
NUP54-204ENST00000506098 HSPA9P38646 679 aaKnown RBP7.33□□□□□ -1.24
NUP54-204ENST00000506098 GRIA2P42262 883 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 TNFRSF4P43489 277 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 CSNK1DP48730 415 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 ECT2LQ008S8 904 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 NSUN2Q08J23 767 aaKnown RBP eCLIP7.33□□□□□ -1.24
NUP54-204ENST00000506098 SLC10A7Q0GE19 358 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 MESP2Q0VG99 397 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 ZBTB17Q13105 803 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 LBRQ14739 615 aaKnown RBP7.33□□□□□ -1.24
NUP54-204ENST00000506098 EIF4HQ15056 248 aaKnown RBP7.33□□□□□ -1.24
NUP54-204ENST00000506098 CYTH1Q15438 398 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 MARC1Q5VT66 337 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 MBLAC2Q68D91 279 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 DUPD1Q68J44 220 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 RETSATQ6NUM9 610 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 C8orf74Q6P047 294 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 NUDT18Q6ZVK8 323 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 B4GALNT4Q76KP1 1039 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 GSTA5Q7RTV2 222 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 PLPP6Q8IY26 295 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 ZNF567Q8N184 647 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 SH2D3CQ8N5H7 860 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 CNTD1Q8N815 330 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 CCDC89Q8N998 374 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 FAM71DQ8N9W8 422 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 GLIS1Q8NBF1 620 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 LRRN4Q8WUT4 740 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 NSMCE1Q8WV22 266 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 RUBCNQ92622 972 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 EXOC4Q96A65 974 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 ISG20Q96AZ6 181 aaKnown RBP7.33□□□□□ -1.24
NUP54-204ENST00000506098 MYO19Q96H55 970 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 ZNF419Q96HQ0 510 aaPredicted RBP7.33□□□□□ -1.24
NUP54-204ENST00000506098 MRGPRX3Q96LB0 322 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 CCDC114Q96M63 670 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 SPATA13Q96N96 652 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 ASB2Q96Q27 587 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 PSKH2Q96QS6 385 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 ERP44Q9BS26 406 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 SPON2Q9BUD6 331 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 HEBP1Q9NRV9 189 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 ELOVL2Q9NXB9 296 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 PAK5Q9P286 719 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 UBA2Q9UBT2 640 aaPredicted RBP7.33□□□□□ -1.24
NUP54-204ENST00000506098 SLC25A13Q9UJS0 675 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 SORCS3Q9UPU3 1222 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 ERVW-1Q9UQF0 538 aa7.33□□□□□ -1.24
NUP54-204ENST00000506098 THADAQ6YHU6 1953 aa7.32□□□□□ -1.24
NUP54-204ENST00000506098 TARSL2A2RTX5 802 aaKnown RBP7.32□□□□□ -1.24
NUP54-204ENST00000506098 PRRT4C9JH25 899 aa7.32□□□□□ -1.24
NUP54-204ENST00000506098 RNF103O00237 685 aa7.32□□□□□ -1.24
NUP54-204ENST00000506098 NPC1O15118 1278 aa7.32□□□□□ -1.24
NUP54-204ENST00000506098 ZBTB24O43167 697 aaPredicted RBP7.32□□□□□ -1.24
NUP54-204ENST00000506098 CTIFO43310 598 aaKnown RBP7.32□□□□□ -1.24
NUP54-204ENST00000506098 ATP9BO43861 1147 aa7.32□□□□□ -1.24
NUP54-204ENST00000506098 ZNF821O75541 412 aaPredicted RBP7.32□□□□□ -1.24
NUP54-204ENST00000506098 KAT7O95251 611 aa7.32□□□□□ -1.24
NUP54-204ENST00000506098 MT-CO1P00395 513 aa7.32□□□□□ -1.24
NUP54-204ENST00000506098 JCHAINP01591 159 aa7.32□□□□□ -1.24
NUP54-204ENST00000506098 APODP05090 189 aa7.32□□□□□ -1.24
NUP54-204ENST00000506098 HLA-DQB2P05538 268 aa7.32□□□□□ -1.24
NUP54-204ENST00000506098 ATP5BP06576 529 aaKnown RBP7.32□□□□□ -1.24
NUP54-204ENST00000506098 DLDP09622 509 aaKnown RBP7.32□□□□□ -1.24
NUP54-204ENST00000506098 SRCP12931 536 aa7.32□□□□□ -1.24
NUP54-204ENST00000506098 ETS1P14921 441 aa7.32□□□□□ -1.24
NUP54-204ENST00000506098 CR2P20023 1033 aa7.32□□□□□ -1.24
NUP54-204ENST00000506098 DRD1P21728 446 aa7.32□□□□□ -1.24
NUP54-204ENST00000506098 CES1P23141 567 aa7.32□□□□□ -1.24
NUP54-204ENST00000506098 ACTN2P35609 894 aa7.32□□□□□ -1.24
NUP54-204ENST00000506098 FDFT1P37268 417 aa7.32□□□□□ -1.24
NUP54-204ENST00000506098 CTSOP43234 321 aaPredicted RBP7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms