RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 TAS1R3Q7RTX0 852 aa10.92□□□□□ -0.66
LIMCH1-205ENST00000503057 DDX53Q86TM3 631 aaKnown RBP10.92□□□□□ -0.66
LIMCH1-205ENST00000503057 ULK2Q8IYT8 1036 aa10.92□□□□□ -0.66
LIMCH1-205ENST00000503057 OR56A4Q8NGH8 313 aa10.92□□□□□ -0.66
LIMCH1-205ENST00000503057 MRPS31Q92665 395 aaKnown RBP10.92□□□□□ -0.66
LIMCH1-205ENST00000503057 SH3KBP1Q96B97 665 aa10.92□□□□□ -0.66
LIMCH1-205ENST00000503057 KCTD14Q9BQ13 255 aaPredicted RBP10.92□□□□□ -0.66
LIMCH1-205ENST00000503057 EMILIN2Q9BXX0 1053 aa10.92□□□□□ -0.66
LIMCH1-205ENST00000503057 WDR41Q9HAD4 459 aa10.92□□□□□ -0.66
LIMCH1-205ENST00000503057 GOLGA2P5Q9HBQ8 144 aa10.92□□□□□ -0.66
LIMCH1-205ENST00000503057 DNAJC28Q9NX36 388 aa10.92□□□□□ -0.66
LIMCH1-205ENST00000503057 RGSL1A5PLK6 1076 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 CREB1P16220 341 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 IL1R2P27930 398 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 CDH5P33151 784 aaPredicted RBP10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 PCDH19Q8TAB3 1148 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 SPOCK2Q92563 424 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 THAP11Q96EK4 314 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 ZNF317Q96PQ6 595 aaPredicted RBP10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 SLC25A13Q9UJS0 675 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 STRCP1A6NGW2 1772 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 LYPLA1O75608 230 aaPredicted RBP10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 KRT36O76013 467 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 AP2A1O95782 977 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 CLPTM1O96005 669 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 FAM58BPP0C7Q3 252 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 ANPEPP15144 967 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 SOX11P35716 441 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 ARHGAP15Q53QZ3 475 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 C1orf220Q5T0J3 134 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 PTCD2Q8WV60 388 aaKnown RBP10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 KCTD4Q8WVF5 259 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 CEP19Q96LK0 163 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 TEPSINQ96N21 525 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 SH3GL1Q99961 368 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 RHOJQ9H4E5 214 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 COL16A1Q07092 1604 aaPredicted RBP10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 URODP06132 367 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 TUFMP49411 452 aaKnown RBP10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 MAD2L1Q13257 205 aaPredicted RBP10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 PPP1R15BQ5SWA1 713 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 ITIH5Q86UX2 942 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 FAM13CQ8NE31 585 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 VPS37AQ8NEZ2 397 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 THUMPD3Q9BV44 507 aaKnown RBP10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 HMGXB4Q9UGU5 601 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 BCORQ6W2J9 1755 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 TBKBP1A7MCY6 615 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 GSC2O15499 205 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 TCF4P15884 667 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 ATP6V1C1P21283 382 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 OASLQ15646 514 aaKnown RBP10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 EMC10Q5UCC4 262 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 ZBTB49Q6ZSB9 765 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 PYDC1Q8WXC3 89 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 SERAC1Q96JX3 654 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 TRIM45Q9H8W5 580 aaPredicted RBP10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 COPG2Q9UBF2 871 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 NUDT5Q9UKK9 219 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 TMEM63AO94886 807 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 CCDC166P0CW27 439 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 COL6A2P12110 1019 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 SERPINB10P48595 397 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 CHRNB3Q05901 458 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 ARHGAP1Q07960 439 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 ZNF467Q7Z7K2 595 aaPredicted RBP10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 PRPF18Q99633 342 aaKnown RBP10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 FAM192AQ9GZU8 254 aa10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 PRDM5Q9NQX1 630 aaPredicted RBP10.91□□□□□ -0.66
LIMCH1-205ENST00000503057 RAD51BO15315 384 aa10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 TPST1O60507 370 aa10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 CCNG1P51959 295 aa10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 TBCELQ5QJ74 424 aa10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 MARK2Q7KZI7 788 aaKnown RBP10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 TMEM192Q8IY95 271 aa10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 TNS4Q8IZW8 715 aa10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 ZNF786Q8N393 782 aa10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 V9GYQ6 96 aa10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 PSMD12O00232 456 aaPredicted RBP10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 RASSF9O75901 435 aa10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 BAIAP3O94812 1187 aa10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 FASP25445 335 aa10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 GLUD2P49448 558 aa10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 SEMA5AQ13591 1074 aa10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 RETSATQ6NUM9 610 aa10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 PKN3Q6P5Z2 889 aa10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 SZRD1Q7Z422 152 aa10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 DHDDSQ86SQ9 333 aa10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 HORMAD1Q86X24 394 aa10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 CENPLQ8N0S6 344 aaPredicted RBP10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 STK40Q8N2I9 435 aa10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 ALG9Q9H6U8 611 aa10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 CCDC167Q9P0B6 97 aa10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 MCM8Q9UJA3 840 aa10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 CRYL1Q9Y2S2 319 aa10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 NRAPQ86VF7 1730 aa10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 ZNF23P17027 643 aa10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 ZNF7P17097 686 aaPredicted RBP10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 CD52P31358 61 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms