RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 JUNDP17535 347 aa16.87■□□□□ 0.29
VIM-208ENST00000497849 CHRNA3P32297 505 aa16.87■□□□□ 0.29
VIM-208ENST00000497849 UGT1A5P35504 534 aa16.87■□□□□ 0.29
VIM-208ENST00000497849 SPIDRQ14159 915 aa16.87■□□□□ 0.29
VIM-208ENST00000497849 CLEC18BQ6UXF7 455 aa16.87■□□□□ 0.29
VIM-208ENST00000497849 FBXO39Q8N4B4 442 aa16.87■□□□□ 0.29
VIM-208ENST00000497849 CLEC18CQ8NCF0 446 aa16.87■□□□□ 0.29
VIM-208ENST00000497849 TMIEQ8NEW7 156 aa16.87■□□□□ 0.29
VIM-208ENST00000497849 OR2A12Q8NGT7 310 aa16.87■□□□□ 0.29
VIM-208ENST00000497849 WDR48Q8TAF3 677 aa16.87■□□□□ 0.29
VIM-208ENST00000497849 SEPT3Q9UH03 358 aa16.87■□□□□ 0.29
VIM-208ENST00000497849 COQ4Q9Y3A0 265 aa16.87■□□□□ 0.29
VIM-208ENST00000497849 PCDHGA4Q9Y5G9 962 aa16.87■□□□□ 0.29
VIM-208ENST00000497849 KCNU1A8MYU2 1149 aa16.86■□□□□ 0.29
VIM-208ENST00000497849 M0QYV0 167 aa16.86■□□□□ 0.29
VIM-208ENST00000497849 GCATO75600 419 aa16.86■□□□□ 0.29
VIM-208ENST00000497849 PAK4O96013 591 aaPredicted RBP16.86■□□□□ 0.29
VIM-208ENST00000497849 MT-CO1P00395 513 aa16.86■□□□□ 0.29
VIM-208ENST00000497849 IGLV3-25P01717 112 aa16.86■□□□□ 0.29
VIM-208ENST00000497849 LIPCP11150 499 aa16.86■□□□□ 0.29
VIM-208ENST00000497849 SRCP12931 536 aa16.86■□□□□ 0.29
VIM-208ENST00000497849 HGFP14210 728 aa16.86■□□□□ 0.29
VIM-208ENST00000497849 WT1P19544 449 aaPredicted RBP16.86■□□□□ 0.29
VIM-208ENST00000497849 RPL13P26373 211 aaKnown RBP16.86■□□□□ 0.29
VIM-208ENST00000497849 IRAK1P51617 712 aa16.86■□□□□ 0.29
VIM-208ENST00000497849 PITX1P78337 314 aaPredicted RBP16.86■□□□□ 0.29
VIM-208ENST00000497849 CENPCQ03188 943 aa16.86■□□□□ 0.29
VIM-208ENST00000497849 EIF2B5Q13144 721 aaKnown RBP16.86■□□□□ 0.29
VIM-208ENST00000497849 EIF4EBP2Q13542 120 aaPredicted RBP16.86■□□□□ 0.29
VIM-208ENST00000497849 PDE1CQ14123 709 aaPredicted RBP16.86■□□□□ 0.29
VIM-208ENST00000497849 CLCA4Q14CN2 919 aa16.86■□□□□ 0.29
VIM-208ENST00000497849 CNGA2Q16280 664 aa16.86■□□□□ 0.29
VIM-208ENST00000497849 ZCWPW2Q504Y3 356 aa16.86■□□□□ 0.29
VIM-208ENST00000497849 ERN2Q76MJ5 926 aaKnown RBP16.86■□□□□ 0.29
VIM-208ENST00000497849 RAB11FIP2Q7L804 512 aa16.86■□□□□ 0.29
VIM-208ENST00000497849 JAMLQ86YT9 394 aa16.86■□□□□ 0.29
VIM-208ENST00000497849 RBFAQ8N0V3 343 aa16.86■□□□□ 0.29
VIM-208ENST00000497849 HTR3CQ8WXA8 447 aa16.86■□□□□ 0.29
VIM-208ENST00000497849 NAT6Q93015 286 aa16.86■□□□□ 0.29
VIM-208ENST00000497849 FAM149B1Q96BN6 582 aa16.86■□□□□ 0.29
VIM-208ENST00000497849 SLC17A9Q9BYT1 436 aa16.86■□□□□ 0.29
VIM-208ENST00000497849 SLC25A18Q9H1K4 315 aa16.86■□□□□ 0.29
VIM-208ENST00000497849 TCEAL2Q9H3H9 227 aaPredicted RBP16.86■□□□□ 0.29
VIM-208ENST00000497849 RCOR1Q9UKL0 485 aa16.86■□□□□ 0.29
VIM-208ENST00000497849 RNF225M0QZC1 329 aaPredicted RBP16.85■□□□□ 0.29
VIM-208ENST00000497849 TRUB2O95900 331 aaKnown RBP16.85■□□□□ 0.29
VIM-208ENST00000497849 CALCAP01258 141 aa16.85■□□□□ 0.29
VIM-208ENST00000497849 PAEPP09466 180 aa16.85■□□□□ 0.29
VIM-208ENST00000497849 RABIFP47224 123 aa16.85■□□□□ 0.29
VIM-208ENST00000497849 RPL34P49207 117 aaKnown RBP16.85■□□□□ 0.29
VIM-208ENST00000497849 OXCT1P55809 520 aa16.85■□□□□ 0.29
VIM-208ENST00000497849 YWHAEP62258 255 aaKnown RBP16.85■□□□□ 0.29
VIM-208ENST00000497849 CYP4F2P78329 520 aa16.85■□□□□ 0.29
VIM-208ENST00000497849 CCDC15Q0P6D6 951 aa16.85■□□□□ 0.29
VIM-208ENST00000497849 EIF3IQ13347 325 aaKnown RBP16.85■□□□□ 0.29
VIM-208ENST00000497849 MAPK8IP2Q13387 824 aaPredicted RBP16.85■□□□□ 0.29
VIM-208ENST00000497849 TTC39BQ5VTQ0 682 aaPredicted RBP16.85■□□□□ 0.29
VIM-208ENST00000497849 FBXL22Q6P050 247 aa16.85■□□□□ 0.29
VIM-208ENST00000497849 TMEM270Q6UE05 265 aa16.85■□□□□ 0.29
VIM-208ENST00000497849 BEND5Q7L4P6 421 aa16.85■□□□□ 0.29
VIM-208ENST00000497849 CHST14Q8NCH0 376 aa16.85■□□□□ 0.29
VIM-208ENST00000497849 KLF6Q99612 283 aaPredicted RBP16.85■□□□□ 0.29
VIM-208ENST00000497849 HDAC8Q9BY41 377 aa16.85■□□□□ 0.29
VIM-208ENST00000497849 SYNDIG1Q9H7V2 258 aa16.85■□□□□ 0.29
VIM-208ENST00000497849 EPB41L5Q9HCM4 733 aa16.85■□□□□ 0.29
VIM-208ENST00000497849 GEMIN8Q9NWZ8 242 aaKnown RBP16.85■□□□□ 0.29
VIM-208ENST00000497849 VPS28Q9UK41 221 aa16.85■□□□□ 0.29
VIM-208ENST00000497849 CFAP45Q9UL16 551 aa16.85■□□□□ 0.29
VIM-208ENST00000497849 PNMA8BQ9ULN7 279 aaPredicted RBP16.85■□□□□ 0.29
VIM-208ENST00000497849 HS3ST2Q9Y278 367 aa16.85■□□□□ 0.29
VIM-208ENST00000497849 ZFC3H1O60293 1989 aaKnown RBP16.84■□□□□ 0.29
VIM-208ENST00000497849 K7ERQ8 282 aa16.84■□□□□ 0.29
VIM-208ENST00000497849 STX10O60499 249 aa16.84■□□□□ 0.29
VIM-208ENST00000497849 BRD2P25440 801 aaKnown RBP16.84■□□□□ 0.29
VIM-208ENST00000497849 ME1P48163 572 aa16.84■□□□□ 0.29
VIM-208ENST00000497849 RPIAP49247 311 aa16.84■□□□□ 0.29
VIM-208ENST00000497849 KRT85P78386 507 aa16.84■□□□□ 0.29
VIM-208ENST00000497849 LRMPQ12912 555 aa16.84■□□□□ 0.29
VIM-208ENST00000497849 C1orf61Q13536 156 aa16.84■□□□□ 0.29
VIM-208ENST00000497849 RABGAP1LQ5R372 815 aa16.84■□□□□ 0.29
VIM-208ENST00000497849 ATL3Q6DD88 541 aa16.84■□□□□ 0.29
VIM-208ENST00000497849 VASH2Q86V25 355 aa16.84■□□□□ 0.29
VIM-208ENST00000497849 ATP6V0D2Q8N8Y2 350 aa16.84■□□□□ 0.29
VIM-208ENST00000497849 PPP1R13BQ96KQ4 1090 aa16.84■□□□□ 0.29
VIM-208ENST00000497849 PPP1R9BQ96SB3 815 aa16.84■□□□□ 0.29
VIM-208ENST00000497849 FUCA2Q9BTY2 467 aa16.84■□□□□ 0.29
VIM-208ENST00000497849 EPN3Q9H201 632 aa16.84■□□□□ 0.29
VIM-208ENST00000497849 DYRK4Q9NR20 520 aa16.84■□□□□ 0.29
VIM-208ENST00000497849 IPO11Q9UI26 975 aaKnown RBP16.84■□□□□ 0.29
VIM-208ENST00000497849 DACH1Q9UI36 760 aa16.84■□□□□ 0.29
VIM-208ENST00000497849 RABGEF1Q9UJ41 708 aa16.84■□□□□ 0.29
VIM-208ENST00000497849 ATP6V1DQ9Y5K8 247 aa16.84■□□□□ 0.29
VIM-208ENST00000497849 SMAD6O43541 496 aaKnown RBP16.83■□□□□ 0.28
VIM-208ENST00000497849 RHOBTB3O94955 611 aa16.83■□□□□ 0.28
VIM-208ENST00000497849 PRNPP04156 253 aa16.83■□□□□ 0.28
VIM-208ENST00000497849 ADKP55263 362 aaKnown RBP16.83■□□□□ 0.28
VIM-208ENST00000497849 RPS21P63220 83 aaKnown RBP16.83■□□□□ 0.28
VIM-208ENST00000497849 SPTBN1Q01082 2364 aaKnown RBP16.83■□□□□ 0.28
VIM-208ENST00000497849 ARSIQ5FYB1 569 aa16.83■□□□□ 0.28
VIM-208ENST00000497849 MANEAQ5SRI9 462 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms