RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 PNPT1Q8TCS8 783 aaKnown RBP9.83□□□□□ -0.84
SYNE1-230ENST00000495090 STYXQ8WUJ0 223 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 TRUB1Q8WWH5 349 aaKnown RBP9.83□□□□□ -0.84
SYNE1-230ENST00000495090 LPGAT1Q92604 370 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 CENPIQ92674 756 aaPredicted RBP9.83□□□□□ -0.84
SYNE1-230ENST00000495090 HEXIM2Q96MH2 286 aaKnown RBP9.83□□□□□ -0.84
SYNE1-230ENST00000495090 NPAS2Q99743 824 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 CIB1Q99828 191 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 NEURL2Q9BR09 285 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 C1QTNF1Q9BXJ1 281 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 BRD8Q9H0E9 1235 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 UPF3AQ9H1J1 476 aaKnown RBP9.83□□□□□ -0.84
SYNE1-230ENST00000495090 ADAMTS10Q9H324 1103 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 LRRC4Q9HBW1 653 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 NSMCE4AQ9NXX6 385 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 CACNA2D2Q9NY47 1150 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 GGA3Q9NZ52 723 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 SELENONQ9NZV5 590 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 USP3Q9Y6I4 520 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 PSME4Q14997 1843 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 PTPRFP10586 1907 aa9.83□□□□□ -0.84
SYNE1-230ENST00000495090 HTR3EA5X5Y0 456 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 E7ENX8 843 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 PLOD2O00469 737 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 GIPC1O14908 333 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 CSPG5O95196 566 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 ZBTB11O95625 1053 aaPredicted RBP9.82□□□□□ -0.84
SYNE1-230ENST00000495090 STAMBPO95630 424 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 PFKMP08237 780 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 TCN1P20061 433 aaPredicted RBP9.82□□□□□ -0.84
SYNE1-230ENST00000495090 OAZ1P54368 228 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 IRF9Q00978 393 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 SP4Q02446 784 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 PRKCQQ04759 706 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 SQLEQ14534 574 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 ANO4Q32M45 955 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 GLRA4Q5JXX5 417 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 C6orf10Q5SRN2 563 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 IER5Q5VY09 327 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 FASTKD5Q7L8L6 764 aaKnown RBP9.82□□□□□ -0.84
SYNE1-230ENST00000495090 TMEM110Q86TL2 294 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 LSMEM2Q8N112 164 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 C1orf127Q8N9H9 656 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 KDM1BQ8NB78 822 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 UBA3Q8TBC4 463 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 ZSCAN18Q8TBC5 510 aaPredicted RBP9.82□□□□□ -0.84
SYNE1-230ENST00000495090 AGR3Q8TD06 166 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 KHSRPQ92945 711 aaKnown RBP eCLIP9.82□□□□□ -0.84
SYNE1-230ENST00000495090 ZUFSPQ96AP4 578 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 FAR2Q96K12 515 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 TSNARE1Q96NA8 513 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 FCRL3Q96P31 734 aaPredicted RBP9.82□□□□□ -0.84
SYNE1-230ENST00000495090 GPR22Q99680 433 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 OLFM1Q99784 485 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 CORO1BQ9BR76 489 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 GPATCH1Q9BRR8 931 aaKnown RBP9.82□□□□□ -0.84
SYNE1-230ENST00000495090 NRBP2Q9NSY0 501 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 TMEM181Q9P2C4 612 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 TSPAN16Q9UKR8 245 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 CDC14AQ9UNH5 594 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 ZCWPW2A0A1B0GU75 182 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 CLRN2A0PK11 232 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 MAGEB16A2A368 324 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 PRORSD1PA6NEY8 169 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 TARM1B6A8C7 271 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 RNF103O00237 685 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 VWA5AO00534 786 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 DLGAP1O14490 977 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 SDHDO14521 159 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 STAU1O95793 577 aaKnown RBP9.82□□□□□ -0.84
SYNE1-230ENST00000495090 FUCA1P04066 466 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 KRT19P08727 400 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 SBK3P0C264 359 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 UGT1A6P19224 532 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 CYP3A5P20815 502 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 CDH3P22223 829 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 UGT1A1P22309 533 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 UGT1A4P22310 534 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 UGT1A3P35503 534 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 UGT1A5P35504 534 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 GMPRP36959 345 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 POLD2P49005 469 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 CCR3P51677 355 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 ATXN3P54252 364 aaPredicted RBP9.82□□□□□ -0.84
SYNE1-230ENST00000495090 MPP1Q00013 466 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 FSTL1Q12841 308 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 ORC1Q13415 861 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 MXD4Q14582 209 aaPredicted RBP9.82□□□□□ -0.84
SYNE1-230ENST00000495090 PSMD5Q16401 504 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 SLC36A3Q495N2 470 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 PKDCCQ504Y2 493 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 REP15Q6BDI9 236 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 NXNQ6DKJ4 435 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 NANOGP8Q6NSW7 305 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 PSTKQ8IV42 348 aaKnown RBP9.82□□□□□ -0.84
SYNE1-230ENST00000495090 ZNF786Q8N393 782 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 FAM156AQ8NDB6 213 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 OR2T34Q8NGX1 318 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 OR2T3Q8NH03 318 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 LRRN4Q8WUT4 740 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms