RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 ENDOVQ8N8Q3 282 aaKnown RBP4.13□□□□□ -1.75
VPS50-219ENST00000495039 WDSUB1Q8N9V3 476 aa4.13□□□□□ -1.75
VPS50-219ENST00000495039 PARD3BQ8TEW8 1205 aa4.13□□□□□ -1.75
VPS50-219ENST00000495039 CLEC4CQ8WTT0 213 aa4.13□□□□□ -1.75
VPS50-219ENST00000495039 SECTM1Q8WVN6 248 aa4.13□□□□□ -1.75
VPS50-219ENST00000495039 TNIP3Q96KP6 325 aa4.13□□□□□ -1.75
VPS50-219ENST00000495039 PGLYRP2Q96PD5 576 aa4.13□□□□□ -1.75
VPS50-219ENST00000495039 DUX3Q96PT4 197 aa4.13□□□□□ -1.75
VPS50-219ENST00000495039 EGLN1Q9GZT9 426 aa4.13□□□□□ -1.75
VPS50-219ENST00000495039 Q9N2J8 555 aa4.13□□□□□ -1.75
VPS50-219ENST00000495039 GAB2Q9UQC2 676 aa4.13□□□□□ -1.75
VPS50-219ENST00000495039 A0A0U1RQJ8 604 aa4.12□□□□□ -1.75
VPS50-219ENST00000495039 XPNPEP2O43895 674 aa4.12□□□□□ -1.75
VPS50-219ENST00000495039 RPP40O75818 363 aaKnown RBP4.12□□□□□ -1.75
VPS50-219ENST00000495039 HLA-DQA2P01906 255 aa4.12□□□□□ -1.75
VPS50-219ENST00000495039 PRKCHP24723 683 aa4.12□□□□□ -1.75
VPS50-219ENST00000495039 MXI1P50539 228 aa4.12□□□□□ -1.75
VPS50-219ENST00000495039 DLG1Q12959 904 aa4.12□□□□□ -1.75
VPS50-219ENST00000495039 ZNF569Q5MCW4 686 aa4.12□□□□□ -1.75
VPS50-219ENST00000495039 SYCP2LQ5T4T6 812 aa4.12□□□□□ -1.75
VPS50-219ENST00000495039 TEX45Q8NA69 505 aa4.12□□□□□ -1.75
VPS50-219ENST00000495039 ZNF114Q8NC26 417 aa4.12□□□□□ -1.75
VPS50-219ENST00000495039 SVIPQ8NHG7 77 aa4.12□□□□□ -1.75
VPS50-219ENST00000495039 CD101Q93033 1021 aa4.12□□□□□ -1.75
VPS50-219ENST00000495039 MYD88Q99836 296 aa4.12□□□□□ -1.75
VPS50-219ENST00000495039 EVA1AQ9H8M9 152 aa4.12□□□□□ -1.75
VPS50-219ENST00000495039 NECTIN3Q9NQS3 549 aa4.12□□□□□ -1.75
VPS50-219ENST00000495039 SEL1LQ9UBV2 794 aa4.12□□□□□ -1.75
VPS50-219ENST00000495039 CDH22Q9UJ99 828 aa4.12□□□□□ -1.75
VPS50-219ENST00000495039 PHTF1Q9UMS5 762 aa4.12□□□□□ -1.75
VPS50-219ENST00000495039 SLC45A1Q9Y2W3 748 aa4.12□□□□□ -1.75
VPS50-219ENST00000495039 ADAM18Q9Y3Q7 739 aa4.12□□□□□ -1.75
VPS50-219ENST00000495039 PCDHAC2Q9Y5I4 1007 aa4.12□□□□□ -1.75
VPS50-219ENST00000495039 NFS1Q9Y697 457 aa4.12□□□□□ -1.75
VPS50-219ENST00000495039 RNMTO43148 476 aaKnown RBP4.11□□□□□ -1.75
VPS50-219ENST00000495039 ZG16O60844 167 aa4.11□□□□□ -1.75
VPS50-219ENST00000495039 CLDN7O95471 211 aa4.11□□□□□ -1.75
VPS50-219ENST00000495039 TBX6O95947 436 aaPredicted RBP4.11□□□□□ -1.75
VPS50-219ENST00000495039 IFIT2P09913 472 aaKnown RBP4.11□□□□□ -1.75
VPS50-219ENST00000495039 CFC1BP0CG36 223 aa4.11□□□□□ -1.75
VPS50-219ENST00000495039 CFC1P0CG37 223 aa4.11□□□□□ -1.75
VPS50-219ENST00000495039 CLCNKBP51801 687 aa4.11□□□□□ -1.75
VPS50-219ENST00000495039 PHEXP78562 749 aa4.11□□□□□ -1.75
VPS50-219ENST00000495039 RNASELQ05823 741 aaKnown RBP4.11□□□□□ -1.75
VPS50-219ENST00000495039 TROAPQ12815 778 aa4.11□□□□□ -1.75
VPS50-219ENST00000495039 UBE4AQ14139 1066 aa4.11□□□□□ -1.75
VPS50-219ENST00000495039 MYBPC2Q14324 1141 aa4.11□□□□□ -1.75
VPS50-219ENST00000495039 FCN2Q15485 313 aa4.11□□□□□ -1.75
VPS50-219ENST00000495039 LONRF1Q17RB8 773 aa4.11□□□□□ -1.75
VPS50-219ENST00000495039 LCE3CQ5T5A8 94 aa4.11□□□□□ -1.75
VPS50-219ENST00000495039 GDPD4Q6W3E5 623 aa4.11□□□□□ -1.75
VPS50-219ENST00000495039 TRMT1LQ7Z2T5 733 aaKnown RBP4.11□□□□□ -1.75
VPS50-219ENST00000495039 DPP9Q86TI2 863 aa4.11□□□□□ -1.75
VPS50-219ENST00000495039 NEK9Q8TD19 979 aa4.11□□□□□ -1.75
VPS50-219ENST00000495039 SORCS1Q8WY21 1168 aa4.11□□□□□ -1.75
VPS50-219ENST00000495039 FBXO17Q96EF6 278 aa4.11□□□□□ -1.75
VPS50-219ENST00000495039 CCDC138Q96M89 665 aa4.11□□□□□ -1.75
VPS50-219ENST00000495039 ZNF700Q9H0M5 742 aa4.11□□□□□ -1.75
VPS50-219ENST00000495039 STARD7Q9NQZ5 370 aa4.11□□□□□ -1.75
VPS50-219ENST00000495039 CHST12Q9NRB3 414 aa4.11□□□□□ -1.75
VPS50-219ENST00000495039 FAM172BPA6NC97 362 aa4.1□□□□□ -1.75
VPS50-219ENST00000495039 TMEM247A6NEH6 219 aa4.1□□□□□ -1.75
VPS50-219ENST00000495039 MBD3L5A6NJ08 208 aaPredicted RBP4.1□□□□□ -1.75
VPS50-219ENST00000495039 APOHP02749 345 aaPredicted RBP4.1□□□□□ -1.75
VPS50-219ENST00000495039 RFC1P35251 1148 aaPredicted RBP4.1□□□□□ -1.75
VPS50-219ENST00000495039 ALDH18A1P54886 795 aaKnown RBP4.1□□□□□ -1.75
VPS50-219ENST00000495039 ST3GAL1Q11201 340 aa4.1□□□□□ -1.75
VPS50-219ENST00000495039 BRD3Q15059 726 aa4.1□□□□□ -1.75
VPS50-219ENST00000495039 RBBP5Q15291 538 aaKnown RBP4.1□□□□□ -1.75
VPS50-219ENST00000495039 XKR9Q5GH70 373 aa4.1□□□□□ -1.75
VPS50-219ENST00000495039 FAM209BQ5JX69 171 aa4.1□□□□□ -1.75
VPS50-219ENST00000495039 TYW3Q6IPR3 259 aaKnown RBP4.1□□□□□ -1.75
VPS50-219ENST00000495039 RINT1Q6NUQ1 792 aa4.1□□□□□ -1.75
VPS50-219ENST00000495039 UNQ6126/PRO20091Q6UXV3 157 aa4.1□□□□□ -1.75
VPS50-219ENST00000495039 SRLQ86TD4 932 aa4.1□□□□□ -1.75
VPS50-219ENST00000495039 SERPINA11Q86U17 422 aa4.1□□□□□ -1.75
VPS50-219ENST00000495039 FAM186BQ8IYM0 893 aa4.1□□□□□ -1.75
VPS50-219ENST00000495039 IL17RCQ8NAC3 791 aa4.1□□□□□ -1.75
VPS50-219ENST00000495039 ZNF485Q8NCK3 441 aa4.1□□□□□ -1.75
VPS50-219ENST00000495039 HDAC7Q8WUI4 952 aa4.1□□□□□ -1.75
VPS50-219ENST00000495039 FEM1CQ96JP0 617 aa4.1□□□□□ -1.75
VPS50-219ENST00000495039 FRG2BQ96QU4 278 aa4.1□□□□□ -1.75
VPS50-219ENST00000495039 ELAC2Q9BQ52 826 aaKnown RBP4.1□□□□□ -1.75
VPS50-219ENST00000495039 TMEM248Q9NWD8 314 aa4.1□□□□□ -1.75
VPS50-219ENST00000495039 SLC25A13Q9UJS0 675 aa4.1□□□□□ -1.75
VPS50-219ENST00000495039 WDR81Q562E7 1941 aa4.09□□□□□ -1.75
VPS50-219ENST00000495039 A0A1B0GVM2 712 aa4.09□□□□□ -1.75
VPS50-219ENST00000495039 DYTNA2CJ06 578 aa4.09□□□□□ -1.75
VPS50-219ENST00000495039 KDM4EB2RXH2 506 aaPredicted RBP4.09□□□□□ -1.75
VPS50-219ENST00000495039 KIF28PB7ZC32 967 aa4.09□□□□□ -1.75
VPS50-219ENST00000495039 AFPP02771 609 aaKnown RBP4.09□□□□□ -1.75
VPS50-219ENST00000495039 HARSP12081 509 aaKnown RBP4.09□□□□□ -1.75
VPS50-219ENST00000495039 TNFSF4P23510 183 aa4.09□□□□□ -1.75
VPS50-219ENST00000495039 TM4SF4P48230 202 aa4.09□□□□□ -1.75
VPS50-219ENST00000495039 ATP12AP54707 1039 aa4.09□□□□□ -1.75
VPS50-219ENST00000495039 PMS2P11Q13670 270 aa4.09□□□□□ -1.75
VPS50-219ENST00000495039 CTTNQ14247 550 aaKnown RBP4.09□□□□□ -1.75
VPS50-219ENST00000495039 SLC35G1Q2M3R5 365 aa4.09□□□□□ -1.75
VPS50-219ENST00000495039 SYTL3Q4VX76 610 aa4.09□□□□□ -1.75
VPS50-219ENST00000495039 RHBDF2Q6PJF5 856 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms