RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 SNRNP25Q9BV90 132 aaKnown RBP25.19■■□□□ 1.62
UPF3A-209ENST00000492270 THAP2Q9H0W7 228 aa25.19■■□□□ 1.62
UPF3A-209ENST00000492270 TM9SF3Q9HD45 589 aa25.19■■□□□ 1.62
UPF3A-209ENST00000492270 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP25.19■■□□□ 1.622e-6■■■■□ 23.6
UPF3A-209ENST00000492270 A0A1B0GVT2 93 aa25.18■■□□□ 1.62
UPF3A-209ENST00000492270 GIPC1O14908 333 aa25.18■■□□□ 1.62
UPF3A-209ENST00000492270 MIPP30301 263 aa25.18■■□□□ 1.62
UPF3A-209ENST00000492270 ETFBP38117 255 aa25.18■■□□□ 1.62
UPF3A-209ENST00000492270 PPP2CBP62714 309 aa25.18■■□□□ 1.62
UPF3A-209ENST00000492270 PPP2CAP67775 309 aa25.18■■□□□ 1.62
UPF3A-209ENST00000492270 POLD3Q15054 466 aaPredicted RBP25.18■■□□□ 1.62
UPF3A-209ENST00000492270 AGBL4Q5VU57 503 aa25.18■■□□□ 1.62
UPF3A-209ENST00000492270 VPS36Q86VN1 386 aa25.18■■□□□ 1.62
UPF3A-209ENST00000492270 GRIN3AQ8TCU5 1115 aa25.18■■□□□ 1.62
UPF3A-209ENST00000492270 ARRDC3Q96B67 414 aa25.18■■□□□ 1.62
UPF3A-209ENST00000492270 KLC2Q9H0B6 622 aa25.18■■□□□ 1.62
UPF3A-209ENST00000492270 DHX35Q9H5Z1 703 aaKnown RBP25.18■■□□□ 1.62
UPF3A-209ENST00000492270 FARP1Q9Y4F1 1045 aaPredicted RBP25.18■■□□□ 1.62
UPF3A-209ENST00000492270 KNL1Q8NG31 2342 aa25.18■■□□□ 1.62
UPF3A-209ENST00000492270 KPNA3O00505 521 aaPredicted RBP25.17■■□□□ 1.62
UPF3A-209ENST00000492270 CBFA2T2O43439 604 aa25.17■■□□□ 1.62
UPF3A-209ENST00000492270 OPHN1O60890 802 aa25.17■■□□□ 1.62
UPF3A-209ENST00000492270 LRCH4O75427 683 aa25.17■■□□□ 1.62
UPF3A-209ENST00000492270 RNF8O76064 485 aa25.17■■□□□ 1.62
UPF3A-209ENST00000492270 NOVA1P51513 510 aaKnown RBP25.17■■□□□ 1.62
UPF3A-209ENST00000492270 TPI1P60174 286 aa25.17■■□□□ 1.62
UPF3A-209ENST00000492270 SLC20A2Q08357 652 aa25.17■■□□□ 1.62
UPF3A-209ENST00000492270 PSAPL1Q6NUJ1 521 aa25.17■■□□□ 1.62
UPF3A-209ENST00000492270 KCTD15Q96SI1 283 aaPredicted RBP25.17■■□□□ 1.62
UPF3A-209ENST00000492270 TM6SF2Q9BZW4 377 aa25.17■■□□□ 1.62
UPF3A-209ENST00000492270 CEP44Q9C0F1 390 aa25.17■■□□□ 1.62
UPF3A-209ENST00000492270 MRPL47Q9HD33 250 aaKnown RBP25.17■■□□□ 1.62
UPF3A-209ENST00000492270 WASF2Q9Y6W5 498 aa25.17■■□□□ 1.62
UPF3A-209ENST00000492270 TBC1D3DA0A087WVF3 549 aa25.16■■□□□ 1.62
UPF3A-209ENST00000492270 TBC1D3IA0A087WXS9 549 aa25.16■■□□□ 1.62
UPF3A-209ENST00000492270 TBC1D3EA0A087X179 549 aa25.16■■□□□ 1.62
UPF3A-209ENST00000492270 TBC1D3KA0A087X1G2 549 aa25.16■■□□□ 1.62
UPF3A-209ENST00000492270 A0A1W2PPC4 97 aa25.16■■□□□ 1.62
UPF3A-209ENST00000492270 TBC1D3FA6NER0 549 aaPredicted RBP25.16■■□□□ 1.62
UPF3A-209ENST00000492270 TBC1D3LB9A6J9 549 aa25.16■■□□□ 1.62
UPF3A-209ENST00000492270 PLRG1O43660 514 aaKnown RBP25.16■■□□□ 1.62
UPF3A-209ENST00000492270 GJB3O75712 270 aa25.16■■□□□ 1.62
UPF3A-209ENST00000492270 TBC1D3HP0C7X1 549 aa25.16■■□□□ 1.62
UPF3A-209ENST00000492270 RECQLP46063 649 aaPredicted RBP25.16■■□□□ 1.62
UPF3A-209ENST00000492270 DNA2P51530 1060 aa25.16■■□□□ 1.62
UPF3A-209ENST00000492270 AFF3P51826 1226 aaKnown RBP25.16■■□□□ 1.62
UPF3A-209ENST00000492270 ARSIQ5FYB1 569 aa25.16■■□□□ 1.62
UPF3A-209ENST00000492270 ERMARDQ5T6L9 678 aa25.16■■□□□ 1.62
UPF3A-209ENST00000492270 SPECC1LQ69YQ0 1117 aa25.16■■□□□ 1.62
UPF3A-209ENST00000492270 TBC1D3GQ6DHY5 549 aa25.16■■□□□ 1.62
UPF3A-209ENST00000492270 TBC1D3CQ6IPX1 549 aa25.16■■□□□ 1.62
UPF3A-209ENST00000492270 ZNF354CQ86Y25 554 aa25.16■■□□□ 1.62
UPF3A-209ENST00000492270 TBC1D3Q8IZP1 549 aaPredicted RBP25.16■■□□□ 1.62
UPF3A-209ENST00000492270 PCDH20Q8N6Y1 951 aaKnown RBP25.16■■□□□ 1.62
UPF3A-209ENST00000492270 DEFB124Q8NES8 71 aa25.16■■□□□ 1.62
UPF3A-209ENST00000492270 TMIEQ8NEW7 156 aa25.16■■□□□ 1.62
UPF3A-209ENST00000492270 ARHGEF26Q96DR7 871 aa25.16■■□□□ 1.62
UPF3A-209ENST00000492270 HMCESQ96FZ2 354 aa25.16■■□□□ 1.62
UPF3A-209ENST00000492270 SLC6A18Q96N87 628 aa25.16■■□□□ 1.62
UPF3A-209ENST00000492270 CATSPERBQ9H7T0 1116 aa25.16■■□□□ 1.62
UPF3A-209ENST00000492270 IL21RQ9HBE5 538 aa25.16■■□□□ 1.62
UPF3A-209ENST00000492270 OSGEPQ9NPF4 335 aa25.16■■□□□ 1.62
UPF3A-209ENST00000492270 DNAAF2Q9NVR5 837 aaKnown RBP25.16■■□□□ 1.62
UPF3A-209ENST00000492270 IL36AQ9UHA7 158 aa25.16■■□□□ 1.62
UPF3A-209ENST00000492270 ANKRD36A6QL64 1941 aa25.16■■□□□ 1.62
UPF3A-209ENST00000492270 PCNX2A6NKB5 2137 aa25.15■■□□□ 1.62
UPF3A-209ENST00000492270 WASH4PA8MWX3 477 aa25.15■■□□□ 1.62
UPF3A-209ENST00000492270 RASA4BC9J798 803 aa25.15■■□□□ 1.62
UPF3A-209ENST00000492270 SLC7A4O43246 635 aa25.15■■□□□ 1.62
UPF3A-209ENST00000492270 RASA4O43374 803 aa25.15■■□□□ 1.62
UPF3A-209ENST00000492270 PRPSAP2O60256 369 aa25.15■■□□□ 1.62
UPF3A-209ENST00000492270 LEFTY1O75610 366 aa25.15■■□□□ 1.62
UPF3A-209ENST00000492270 TCF4P15884 667 aa25.15■■□□□ 1.62
UPF3A-209ENST00000492270 HNRNPH3P31942 346 aaKnown RBP25.15■■□□□ 1.62
UPF3A-209ENST00000492270 CCR5P51681 352 aa25.15■■□□□ 1.62
UPF3A-209ENST00000492270 CCNHP51946 323 aaPredicted RBP25.15■■□□□ 1.62
UPF3A-209ENST00000492270 TAS2R38P59533 333 aa25.15■■□□□ 1.62
UPF3A-209ENST00000492270 CARD16Q5EG05 197 aa25.15■■□□□ 1.62
UPF3A-209ENST00000492270 CCDC122Q5T0U0 273 aa25.15■■□□□ 1.62
UPF3A-209ENST00000492270 PIP5KL1Q5T9C9 394 aa25.15■■□□□ 1.62
UPF3A-209ENST00000492270 VSTM4Q8IW00 320 aa25.15■■□□□ 1.62
UPF3A-209ENST00000492270 BTBD6Q96KE9 485 aa25.15■■□□□ 1.62
UPF3A-209ENST00000492270 HPCAL4Q9UM19 191 aa25.15■■□□□ 1.62
UPF3A-209ENST00000492270 NENFQ9UMX5 172 aa25.15■■□□□ 1.62
UPF3A-209ENST00000492270 EEF2KO00418 725 aaKnown RBP25.14■■□□□ 1.62
UPF3A-209ENST00000492270 FGF10O15520 208 aaPredicted RBP25.14■■□□□ 1.62
UPF3A-209ENST00000492270 KDELR3O43731 214 aa25.14■■□□□ 1.62
UPF3A-209ENST00000492270 PRNPP04156 253 aa25.14■■□□□ 1.62
UPF3A-209ENST00000492270 ADRB1P08588 477 aa25.14■■□□□ 1.62
UPF3A-209ENST00000492270 EIF4A3P38919 411 aaKnown RBP25.14■■□□□ 1.62
UPF3A-209ENST00000492270 GRIA4P48058 902 aa25.14■■□□□ 1.62
UPF3A-209ENST00000492270 KCNT1Q5JUK3 1230 aa25.14■■□□□ 1.62
UPF3A-209ENST00000492270 N4BP2L1Q5TBK1 243 aaPredicted RBP25.14■■□□□ 1.62
UPF3A-209ENST00000492270 ALKBH5Q6P6C2 394 aaKnown RBP25.14■■□□□ 1.62
UPF3A-209ENST00000492270 NETO2Q8NC67 525 aa25.14■■□□□ 1.62
UPF3A-209ENST00000492270 OR6K2Q8NGY2 324 aa25.14■■□□□ 1.62
UPF3A-209ENST00000492270 NUP85Q9BW27 656 aa25.14■■□□□ 1.62
UPF3A-209ENST00000492270 ZDHHC5Q9C0B5 715 aa25.14■■□□□ 1.62
UPF3A-209ENST00000492270 CXorf51AA0A1B0GTR3 108 aa25.13■■□□□ 1.61
UPF3A-209ENST00000492270 WNT9AO14904 365 aa25.13■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms