RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 PACSIN1Q9BY11 444 aa18.5■□□□□ 0.55
COL9A3-214ENST00000490398 PCED1AQ9H1Q7 454 aa18.5■□□□□ 0.55
COL9A3-214ENST00000490398 IL21RQ9HBE5 538 aa18.5■□□□□ 0.55
COL9A3-214ENST00000490398 TM9SF3Q9HD45 589 aa18.5■□□□□ 0.55
COL9A3-214ENST00000490398 SCINQ9Y6U3 715 aa18.5■□□□□ 0.55
COL9A3-214ENST00000490398 WASF2Q9Y6W5 498 aa18.5■□□□□ 0.55
COL9A3-214ENST00000490398 SPEGQ15772 3267 aa18.5■□□□□ 0.55
COL9A3-214ENST00000490398 WASH4PA8MWX3 477 aa18.49■□□□□ 0.55
COL9A3-214ENST00000490398 GIPC1O14908 333 aa18.49■□□□□ 0.55
COL9A3-214ENST00000490398 ALOX15BO15296 676 aa18.49■□□□□ 0.55
COL9A3-214ENST00000490398 BCAT2O15382 392 aaPredicted RBP18.49■□□□□ 0.55
COL9A3-214ENST00000490398 CYP1A2P05177 515 aa18.49■□□□□ 0.55
COL9A3-214ENST00000490398 TPM3P06753 285 aa18.49■□□□□ 0.55
COL9A3-214ENST00000490398 KCNA4P22459 653 aa18.49■□□□□ 0.55
COL9A3-214ENST00000490398 CSNK1EP49674 416 aaKnown RBP18.49■□□□□ 0.55
COL9A3-214ENST00000490398 CLCN6P51797 869 aa18.49■□□□□ 0.55
COL9A3-214ENST00000490398 AIF1P55008 147 aa18.49■□□□□ 0.55
COL9A3-214ENST00000490398 ADKP55263 362 aaKnown RBP18.49■□□□□ 0.55
COL9A3-214ENST00000490398 TAS2R38P59533 333 aa18.49■□□□□ 0.55
COL9A3-214ENST00000490398 KCNT1Q5JUK3 1230 aa18.49■□□□□ 0.55
COL9A3-214ENST00000490398 ERMARDQ5T6L9 678 aa18.49■□□□□ 0.55
COL9A3-214ENST00000490398 MINDY1Q8N5J2 469 aa18.49■□□□□ 0.55
COL9A3-214ENST00000490398 OR2T34Q8NGX1 318 aa18.49■□□□□ 0.55
COL9A3-214ENST00000490398 OR6K2Q8NGY2 324 aa18.49■□□□□ 0.55
COL9A3-214ENST00000490398 TM6SF2Q9BZW4 377 aa18.49■□□□□ 0.55
COL9A3-214ENST00000490398 MAGEH1Q9H213 219 aa18.49■□□□□ 0.55
COL9A3-214ENST00000490398 SUSD2Q9UGT4 822 aa18.49■□□□□ 0.55
COL9A3-214ENST00000490398 MFHAS1Q9Y4C4 1052 aa18.49■□□□□ 0.55
COL9A3-214ENST00000490398 A0A1B0GVT2 93 aa18.48■□□□□ 0.55
COL9A3-214ENST00000490398 RASA4BC9J798 803 aa18.48■□□□□ 0.55
COL9A3-214ENST00000490398 KPNA3O00505 521 aaPredicted RBP18.48■□□□□ 0.55
COL9A3-214ENST00000490398 RASA4O43374 803 aa18.48■□□□□ 0.55
COL9A3-214ENST00000490398 KDELR3O43731 214 aa18.48■□□□□ 0.55
COL9A3-214ENST00000490398 GNSP15586 552 aa18.48■□□□□ 0.55
COL9A3-214ENST00000490398 CD27P26842 260 aa18.48■□□□□ 0.55
COL9A3-214ENST00000490398 PI4KAP42356 2102 aa18.48■□□□□ 0.55
COL9A3-214ENST00000490398 DNA2P51530 1060 aa18.48■□□□□ 0.55
COL9A3-214ENST00000490398 TPI1P60174 286 aa18.48■□□□□ 0.55
COL9A3-214ENST00000490398 SLC20A2Q08357 652 aa18.48■□□□□ 0.55
COL9A3-214ENST00000490398 CARD16Q5EG05 197 aa18.48■□□□□ 0.55
COL9A3-214ENST00000490398 PIP5KL1Q5T9C9 394 aa18.48■□□□□ 0.55
COL9A3-214ENST00000490398 TP53INP2Q8IXH6 220 aa18.48■□□□□ 0.55
COL9A3-214ENST00000490398 OR8K1Q8NGG5 319 aa18.48■□□□□ 0.55
COL9A3-214ENST00000490398 CELF6Q96J87 481 aaKnown RBP18.48■□□□□ 0.55
COL9A3-214ENST00000490398 SLC6A18Q96N87 628 aa18.48■□□□□ 0.55
COL9A3-214ENST00000490398 NUP85Q9BW27 656 aa18.48■□□□□ 0.55
COL9A3-214ENST00000490398 RETREG1Q9H6L5 497 aa18.48■□□□□ 0.55
COL9A3-214ENST00000490398 MRPL47Q9HD33 250 aaKnown RBP18.48■□□□□ 0.55
COL9A3-214ENST00000490398 LRRC72A6NJI9 287 aa18.47■□□□□ 0.55
COL9A3-214ENST00000490398 EEF2KO00418 725 aaKnown RBP18.47■□□□□ 0.55
COL9A3-214ENST00000490398 KCNK3O14649 394 aa18.47■□□□□ 0.55
COL9A3-214ENST00000490398 PRPSAP2O60256 369 aa18.47■□□□□ 0.55
COL9A3-214ENST00000490398 MFAP3LO75121 409 aa18.47■□□□□ 0.55
COL9A3-214ENST00000490398 LEFTY1O75610 366 aa18.47■□□□□ 0.55
COL9A3-214ENST00000490398 RNF8O76064 485 aa18.47■□□□□ 0.55
COL9A3-214ENST00000490398 KCNK5O95279 499 aa18.47■□□□□ 0.55
COL9A3-214ENST00000490398 CCNHP51946 323 aaPredicted RBP18.47■□□□□ 0.55
COL9A3-214ENST00000490398 TBX2Q13207 712 aaPredicted RBP18.47■□□□□ 0.55
COL9A3-214ENST00000490398 SMTNL2Q2TAL5 461 aa18.47■□□□□ 0.55
COL9A3-214ENST00000490398 PPP6R3Q5H9R7 873 aaPredicted RBP18.47■□□□□ 0.55
COL9A3-214ENST00000490398 ATXN7L2Q5T6C5 722 aaPredicted RBP18.47■□□□□ 0.55
COL9A3-214ENST00000490398 FAM46CQ5VWP2 391 aa18.47■□□□□ 0.55
COL9A3-214ENST00000490398 RABEPKQ7Z6M1 372 aa18.47■□□□□ 0.55
COL9A3-214ENST00000490398 DSG4Q86SJ6 1040 aa18.47■□□□□ 0.55
COL9A3-214ENST00000490398 VPS36Q86VN1 386 aa18.47■□□□□ 0.55
COL9A3-214ENST00000490398 UMODL1-AS1Q8N2C9 162 aa18.47■□□□□ 0.55
COL9A3-214ENST00000490398 PCDH20Q8N6Y1 951 aaKnown RBP18.47■□□□□ 0.55
COL9A3-214ENST00000490398 CEP44Q9C0F1 390 aa18.47■□□□□ 0.55
COL9A3-214ENST00000490398 SLC39A8Q9C0K1 460 aa18.47■□□□□ 0.55
COL9A3-214ENST00000490398 RBSNQ9H1K0 784 aa18.47■□□□□ 0.55
COL9A3-214ENST00000490398 LRRC19Q9H756 370 aa18.47■□□□□ 0.55
COL9A3-214ENST00000490398 ABHD10Q9NUJ1 306 aa18.47■□□□□ 0.55
COL9A3-214ENST00000490398 CWC15Q9P013 229 aaKnown RBP18.47■□□□□ 0.55
COL9A3-214ENST00000490398 IL36AQ9UHA7 158 aa18.47■□□□□ 0.55
COL9A3-214ENST00000490398 ANAPC7Q9UJX3 599 aa18.47■□□□□ 0.55
COL9A3-214ENST00000490398 CHD5Q8TDI0 1954 aa18.46■□□□□ 0.55
COL9A3-214ENST00000490398 CNOT1A5YKK6 2376 aaKnown RBP18.46■□□□□ 0.55
COL9A3-214ENST00000490398 TBC1D3DA0A087WVF3 549 aa18.46■□□□□ 0.55
COL9A3-214ENST00000490398 TBC1D3IA0A087WXS9 549 aa18.46■□□□□ 0.55
COL9A3-214ENST00000490398 TBC1D3EA0A087X179 549 aa18.46■□□□□ 0.55
COL9A3-214ENST00000490398 TBC1D3KA0A087X1G2 549 aa18.46■□□□□ 0.55
COL9A3-214ENST00000490398 TBC1D3FA6NER0 549 aaPredicted RBP18.46■□□□□ 0.55
COL9A3-214ENST00000490398 TBC1D3LB9A6J9 549 aa18.46■□□□□ 0.55
COL9A3-214ENST00000490398 C1QTNF3-AMACRE9PGA6 284 aa18.46■□□□□ 0.55
COL9A3-214ENST00000490398 J3KR12 359 aa18.46■□□□□ 0.55
COL9A3-214ENST00000490398 PLRG1O43660 514 aaKnown RBP18.46■□□□□ 0.55
COL9A3-214ENST00000490398 BUB1O43683 1085 aa18.46■□□□□ 0.55
COL9A3-214ENST00000490398 GJB3O75712 270 aa18.46■□□□□ 0.55
COL9A3-214ENST00000490398 WNT1P04628 370 aa18.46■□□□□ 0.55
COL9A3-214ENST00000490398 TBC1D3HP0C7X1 549 aa18.46■□□□□ 0.55
COL9A3-214ENST00000490398 ERCC2P18074 760 aa18.46■□□□□ 0.55
COL9A3-214ENST00000490398 MAT2AP31153 395 aaKnown RBP18.46■□□□□ 0.55
COL9A3-214ENST00000490398 PCK1P35558 622 aa18.46■□□□□ 0.55
COL9A3-214ENST00000490398 SFSWAPQ12872 951 aaKnown RBP18.46■□□□□ 0.55
COL9A3-214ENST00000490398 SERINC3Q13530 473 aa18.46■□□□□ 0.55
COL9A3-214ENST00000490398 KIF19Q2TAC6 998 aa18.46■□□□□ 0.55
COL9A3-214ENST00000490398 TBC1D3GQ6DHY5 549 aa18.46■□□□□ 0.55
COL9A3-214ENST00000490398 TBC1D3CQ6IPX1 549 aa18.46■□□□□ 0.55
COL9A3-214ENST00000490398 ARHGAP36Q6ZRI8 547 aa18.46■□□□□ 0.55
COL9A3-214ENST00000490398 ZNF354CQ86Y25 554 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms