RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 GRM3Q14832 879 aa3.43□□□□□ -1.86
SMC4-220ENST00000488017 PLA2G4FQ68DD2 849 aa3.43□□□□□ -1.86
SMC4-220ENST00000488017 TBC1D3GQ6DHY5 549 aa3.43□□□□□ -1.86
SMC4-220ENST00000488017 TYW3Q6IPR3 259 aaKnown RBP3.43□□□□□ -1.86
SMC4-220ENST00000488017 TBC1D3CQ6IPX1 549 aa3.43□□□□□ -1.86
SMC4-220ENST00000488017 TBC1D3Q8IZP1 549 aaPredicted RBP3.43□□□□□ -1.86
SMC4-220ENST00000488017 PGBD5Q8N414 524 aa3.43□□□□□ -1.86
SMC4-220ENST00000488017 ENDOVQ8N8Q3 282 aaKnown RBP3.43□□□□□ -1.86
SMC4-220ENST00000488017 HDAC7Q8WUI4 952 aa3.43□□□□□ -1.86
SMC4-220ENST00000488017 FRG2BQ96QU4 278 aa3.43□□□□□ -1.86
SMC4-220ENST00000488017 RBM4Q9BWF3 364 aaKnown RBP3.43□□□□□ -1.86
SMC4-220ENST00000488017 ZNF696Q9H7X3 374 aa3.43□□□□□ -1.86
SMC4-220ENST00000488017 Q9N2J8 555 aa3.43□□□□□ -1.86
SMC4-220ENST00000488017 CDH22Q9UJ99 828 aa3.43□□□□□ -1.86
SMC4-220ENST00000488017 MAN2B2Q9Y2E5 1009 aa3.43□□□□□ -1.86
SMC4-220ENST00000488017 KRTAP5-8O75690 187 aa3.42□□□□□ -1.86
SMC4-220ENST00000488017 PEPDP12955 493 aa3.42□□□□□ -1.86
SMC4-220ENST00000488017 FMO4P31512 558 aa3.42□□□□□ -1.86
SMC4-220ENST00000488017 CLCNKBP51801 687 aa3.42□□□□□ -1.86
SMC4-220ENST00000488017 ADORA2A-AS1P86434 159 aa3.42□□□□□ -1.86
SMC4-220ENST00000488017 SERPINA11Q86U17 422 aa3.42□□□□□ -1.86
SMC4-220ENST00000488017 RBFAQ8N0V3 343 aa3.42□□□□□ -1.86
SMC4-220ENST00000488017 CCDC33Q8N5R6 958 aa3.42□□□□□ -1.86
SMC4-220ENST00000488017 RFWD2Q8NHY2 731 aa3.42□□□□□ -1.86
SMC4-220ENST00000488017 WDR60Q8WVS4 1066 aa3.42□□□□□ -1.86
SMC4-220ENST00000488017 TMEM18Q96B42 140 aa3.42□□□□□ -1.86
SMC4-220ENST00000488017 GPATCH3Q96I76 525 aa3.42□□□□□ -1.86
SMC4-220ENST00000488017 NPAS1Q99742 590 aa3.42□□□□□ -1.86
SMC4-220ENST00000488017 APOL5Q9BWW9 433 aa3.42□□□□□ -1.86
SMC4-220ENST00000488017 SLC52A1Q9NWF4 448 aa3.42□□□□□ -1.86
SMC4-220ENST00000488017 MST1RQ04912 1400 aa3.42□□□□□ -1.86
SMC4-220ENST00000488017 FRMPD2Q68DX3 1309 aaPredicted RBP3.42□□□□□ -1.86
SMC4-220ENST00000488017 KDM4EB2RXH2 506 aaPredicted RBP3.41□□□□□ -1.86
SMC4-220ENST00000488017 SLC22A3O75751 556 aa3.41□□□□□ -1.86
SMC4-220ENST00000488017 ANXA6P08133 673 aa3.41□□□□□ -1.86
SMC4-220ENST00000488017 GRM4Q14833 912 aa3.41□□□□□ -1.86
SMC4-220ENST00000488017 CALCRLQ16602 461 aa3.41□□□□□ -1.86
SMC4-220ENST00000488017 ARL6IP4Q66PJ3 421 aaKnown RBP3.41□□□□□ -1.86
SMC4-220ENST00000488017 NCAPH2Q6IBW4 605 aa3.41□□□□□ -1.86
SMC4-220ENST00000488017 CLEC4CQ8WTT0 213 aa3.41□□□□□ -1.86
SMC4-220ENST00000488017 FAR1Q8WVX9 515 aa3.41□□□□□ -1.86
SMC4-220ENST00000488017 CCDC134Q9H6E4 229 aa3.41□□□□□ -1.86
SMC4-220ENST00000488017 ZNF334Q9HCZ1 680 aaPredicted RBP3.41□□□□□ -1.86
SMC4-220ENST00000488017 TP53BP1Q12888 1972 aaPredicted RBP3.4□□□□□ -1.86
SMC4-220ENST00000488017 FAM234BA2RU67 622 aa3.4□□□□□ -1.87
SMC4-220ENST00000488017 APOL1O14791 398 aa3.4□□□□□ -1.87
SMC4-220ENST00000488017 PCDH17O14917 1159 aa3.4□□□□□ -1.87
SMC4-220ENST00000488017 EXTL3O43909 919 aa3.4□□□□□ -1.87
SMC4-220ENST00000488017 PMS2P2O95744 297 aa3.4□□□□□ -1.87
SMC4-220ENST00000488017 SCGB1D2O95969 90 aa3.4□□□□□ -1.87
SMC4-220ENST00000488017 CH25HO95992 272 aa3.4□□□□□ -1.87
SMC4-220ENST00000488017 IGHV4-30-4P0DP06 118 aa3.4□□□□□ -1.87
SMC4-220ENST00000488017 RFC1P35251 1148 aaPredicted RBP3.4□□□□□ -1.87
SMC4-220ENST00000488017 TIMP3P35625 211 aa3.4□□□□□ -1.87
SMC4-220ENST00000488017 ZNF132P52740 706 aa3.4□□□□□ -1.87
SMC4-220ENST00000488017 FAM3BP58499 235 aaPredicted RBP3.4□□□□□ -1.87
SMC4-220ENST00000488017 ANAPC15P60006 121 aa3.4□□□□□ -1.87
SMC4-220ENST00000488017 ECT2LQ008S8 904 aa3.4□□□□□ -1.87
SMC4-220ENST00000488017 DHX34Q14147 1143 aaKnown RBP3.4□□□□□ -1.87
SMC4-220ENST00000488017 ZACNQ401N2 412 aa3.4□□□□□ -1.87
SMC4-220ENST00000488017 SYTL3Q4VX76 610 aa3.4□□□□□ -1.87
SMC4-220ENST00000488017 ZNF569Q5MCW4 686 aa3.4□□□□□ -1.87
SMC4-220ENST00000488017 CYB5RLQ6IPT4 315 aa3.4□□□□□ -1.87
SMC4-220ENST00000488017 C19orf48Q6RUI8 117 aa3.4□□□□□ -1.87
SMC4-220ENST00000488017 LYG1Q8N1E2 194 aa3.4□□□□□ -1.87
SMC4-220ENST00000488017 BARHL1Q9BZE3 327 aa3.4□□□□□ -1.87
SMC4-220ENST00000488017 MBD3L5A6NJ08 208 aaPredicted RBP3.39□□□□□ -1.87
SMC4-220ENST00000488017 HNRNPCL2B2RXH8 293 aa3.39□□□□□ -1.87
SMC4-220ENST00000488017 KIF1CO43896 1103 aaKnown RBP3.39□□□□□ -1.87
SMC4-220ENST00000488017 ZNF500O60304 480 aaPredicted RBP3.39□□□□□ -1.87
SMC4-220ENST00000488017 RPP40O75818 363 aaKnown RBP3.39□□□□□ -1.87
SMC4-220ENST00000488017 GAGE7O76087 117 aa3.39□□□□□ -1.87
SMC4-220ENST00000488017 GAGE12FP0CL80 117 aa3.39□□□□□ -1.87
SMC4-220ENST00000488017 GAGE12GP0CL81 117 aa3.39□□□□□ -1.87
SMC4-220ENST00000488017 GAGE12IP0CL82 117 aa3.39□□□□□ -1.87
SMC4-220ENST00000488017 KCNA5P22460 613 aa3.39□□□□□ -1.87
SMC4-220ENST00000488017 CASP5P51878 434 aa3.39□□□□□ -1.87
SMC4-220ENST00000488017 GAGE1Q13065 139 aa3.39□□□□□ -1.87
SMC4-220ENST00000488017 GAGE4Q13068 117 aa3.39□□□□□ -1.87
SMC4-220ENST00000488017 TMEM30BQ3MIR4 351 aa3.39□□□□□ -1.87
SMC4-220ENST00000488017 SETMARQ53H47 684 aaPredicted RBP3.39□□□□□ -1.87
SMC4-220ENST00000488017 MTBPQ96DY7 904 aa3.39□□□□□ -1.87
SMC4-220ENST00000488017 OR1F2PQ96R84 312 aa3.39□□□□□ -1.87
SMC4-220ENST00000488017 XRN2Q9H0D6 950 aaKnown RBP eCLIP3.39□□□□□ -1.87
SMC4-220ENST00000488017 CLK4Q9HAZ1 481 aaKnown RBP3.39□□□□□ -1.87
SMC4-220ENST00000488017 NECTIN3Q9NQS3 549 aa3.39□□□□□ -1.87
SMC4-220ENST00000488017 ZFP57Q9NU63 452 aa3.39□□□□□ -1.87
SMC4-220ENST00000488017 DDX43Q9NXZ2 648 aaKnown RBP3.39□□□□□ -1.87
SMC4-220ENST00000488017 LRFN1Q9P244 771 aa3.39□□□□□ -1.87
SMC4-220ENST00000488017 OSGIN2Q9Y236 505 aa3.39□□□□□ -1.87
SMC4-220ENST00000488017 SYT5O00445 386 aa3.38□□□□□ -1.87
SMC4-220ENST00000488017 ATP1A1P05023 1023 aaKnown RBP3.38□□□□□ -1.87
SMC4-220ENST00000488017 CKMT1AP12532 417 aa3.38□□□□□ -1.87
SMC4-220ENST00000488017 RPL3P39023 403 aaKnown RBP3.38□□□□□ -1.87
SMC4-220ENST00000488017 NR0B1P51843 470 aaKnown RBP3.38□□□□□ -1.87
SMC4-220ENST00000488017 GALEQ14376 348 aa3.38□□□□□ -1.87
SMC4-220ENST00000488017 NFE2Q16621 373 aaPredicted RBP3.38□□□□□ -1.87
SMC4-220ENST00000488017 KRTAP5-5Q701N2 237 aaPredicted RBP3.38□□□□□ -1.87
SMC4-220ENST00000488017 TMC8Q8IU68 726 aa3.38□□□□□ -1.87
SMC4-220ENST00000488017 EPHX4Q8IUS5 362 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms