RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 SPON2Q9BUD6 331 aa7.08□□□□□ -1.28
HDAC3-209ENST00000486618 PAPOLBQ9NRJ5 636 aaKnown RBP7.08□□□□□ -1.28
HDAC3-209ENST00000486618 DEC1Q9P2X7 70 aa7.08□□□□□ -1.28
HDAC3-209ENST00000486618 NFKBIL1Q9UBC1 381 aaPredicted RBP7.08□□□□□ -1.28
HDAC3-209ENST00000486618 ADAMTS1Q9UHI8 967 aa7.08□□□□□ -1.28
HDAC3-209ENST00000486618 L1RE1Q9UN81 338 aa7.08□□□□□ -1.28
HDAC3-209ENST00000486618 AGAP1Q9UPQ3 857 aa7.08□□□□□ -1.28
HDAC3-209ENST00000486618 UTP18Q9Y5J1 556 aaKnown RBP eCLIP7.08□□□□□ -1.28
HDAC3-209ENST00000486618 IGHV1OR15-9A0A0B4J2B8 117 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 ZNF840PA6NDX5 716 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 ANKRD63C9JTQ0 380 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 NDC80O14777 642 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 TLR5O60602 858 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 TBCAO75347 108 aaKnown RBP7.07□□□□□ -1.28
HDAC3-209ENST00000486618 STAMBPO95630 424 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 KRT1P04264 644 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 ITGB3P05106 788 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 MBL2P11226 248 aaPredicted RBP7.07□□□□□ -1.28
HDAC3-209ENST00000486618 HOXB2P14652 356 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 GABRG2P18507 467 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 POLR2BP30876 1174 aaKnown RBP7.07□□□□□ -1.28
HDAC3-209ENST00000486618 NTSR1P30989 418 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 GRIK1P39086 918 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 TOB1P50616 345 aaPredicted RBP7.07□□□□□ -1.28
HDAC3-209ENST00000486618 AP2B1P63010 937 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 MPP1Q00013 466 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 TFAMQ00059 246 aaKnown RBP7.07□□□□□ -1.28
HDAC3-209ENST00000486618 KDSRQ06136 332 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 RASA2Q15283 850 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 POU4F3Q15319 338 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 CNGA3Q16281 694 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 IL17AQ16552 155 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 SETMARQ53H47 684 aaPredicted RBP7.07□□□□□ -1.28
HDAC3-209ENST00000486618 SLC39A4Q6P5W5 647 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 FAM171BQ6P995 826 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 KDELC1Q6UW63 502 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 NEK10Q6ZWH5 1172 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 TMPRSS7Q7RTY8 843 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 TRIM74Q86UV6 250 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 TRIM73Q86UV7 250 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 GPBP1Q86WP2 473 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 SLC41A1Q8IVJ1 513 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 CCDC65Q8IXS2 484 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 ADGRF2Q8IZF7 708 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 GALNT15Q8N3T1 639 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 AFAP1L2Q8N4X5 818 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 CSGALNACT2Q8N6G5 542 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 C2CD4AQ8NCU7 369 aaPredicted RBP7.07□□□□□ -1.28
HDAC3-209ENST00000486618 PARD3BQ8TEW8 1205 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 SETD7Q8WTS6 366 aaKnown RBP7.07□□□□□ -1.28
HDAC3-209ENST00000486618 CTNNBL1Q8WYA6 563 aaPredicted RBP7.07□□□□□ -1.28
HDAC3-209ENST00000486618 POMGNT1Q8WZA1 660 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 ANAPC16Q96DE5 110 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 CALML4Q96GE6 196 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 ZNF419Q96HQ0 510 aaPredicted RBP7.07□□□□□ -1.28
HDAC3-209ENST00000486618 DHTKD1Q96HY7 919 aaPredicted RBP7.07□□□□□ -1.28
HDAC3-209ENST00000486618 BBC3Q96PG8 261 aaPredicted RBP7.07□□□□□ -1.28
HDAC3-209ENST00000486618 SLITRK1Q96PX8 696 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 PSMG3-AS1Q96PY0 264 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 PKMYT1Q99640 499 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 CDC6Q99741 560 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 TTLL2Q9BWV7 592 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 NACA2Q9H009 215 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 GDAP2Q9NXN4 497 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 CALCOCO1Q9P1Z2 691 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 CFAP97Q9P2B7 532 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 CYP8B1Q9UNU6 501 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 KIF3AQ9Y496 699 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 SNX9Q9Y5X1 595 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 CPQQ9Y646 472 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 STYXL1Q9Y6J8 313 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 NAV2Q8IVL1 2488 aa7.07□□□□□ -1.28
HDAC3-209ENST00000486618 A0A1B0GTW7 788 aa7.06□□□□□ -1.28
HDAC3-209ENST00000486618 FAM221AA4D161 298 aa7.06□□□□□ -1.28
HDAC3-209ENST00000486618 VWA3AA6NCI4 1184 aa7.06□□□□□ -1.28
HDAC3-209ENST00000486618 GABRDO14764 452 aa7.06□□□□□ -1.28
HDAC3-209ENST00000486618 PMM2O15305 246 aa7.06□□□□□ -1.28
HDAC3-209ENST00000486618 KLHL41O60662 606 aa7.06□□□□□ -1.28
HDAC3-209ENST00000486618 TULP3O75386 442 aa7.06□□□□□ -1.28
HDAC3-209ENST00000486618 CER1O95813 267 aa7.06□□□□□ -1.28
HDAC3-209ENST00000486618 OLFM2O95897 454 aa7.06□□□□□ -1.28
HDAC3-209ENST00000486618 KRT19P08727 400 aa7.06□□□□□ -1.28
HDAC3-209ENST00000486618 ZNF883P0CG24 379 aa7.06□□□□□ -1.28
HDAC3-209ENST00000486618 P4HA1P13674 534 aa7.06□□□□□ -1.28
HDAC3-209ENST00000486618 PLCG1P19174 1290 aa7.06□□□□□ -1.28
HDAC3-209ENST00000486618 XPAP23025 273 aaPredicted RBP7.06□□□□□ -1.28
HDAC3-209ENST00000486618 CHKAP35790 457 aa7.06□□□□□ -1.28
HDAC3-209ENST00000486618 CLNS1AP54105 237 aaKnown RBP7.06□□□□□ -1.28
HDAC3-209ENST00000486618 NOP14P78316 857 aaKnown RBP7.06□□□□□ -1.28
HDAC3-209ENST00000486618 RBP5P82980 135 aa7.06□□□□□ -1.28
HDAC3-209ENST00000486618 ZXDBP98169 803 aa7.06□□□□□ -1.28
HDAC3-209ENST00000486618 MESP2Q0VG99 397 aa7.06□□□□□ -1.28
HDAC3-209ENST00000486618 MYO1EQ12965 1108 aa7.06□□□□□ -1.28
HDAC3-209ENST00000486618 GRIK2Q13002 908 aa7.06□□□□□ -1.28
HDAC3-209ENST00000486618 TRIM14Q14142 442 aa7.06□□□□□ -1.28
HDAC3-209ENST00000486618 GBX1Q14549 363 aa7.06□□□□□ -1.28
HDAC3-209ENST00000486618 TMEM119Q4V9L6 283 aa7.06□□□□□ -1.28
HDAC3-209ENST00000486618 ATP13A4Q4VNC1 1196 aa7.06□□□□□ -1.28
HDAC3-209ENST00000486618 ANKRD39Q53RE8 183 aa7.06□□□□□ -1.28
HDAC3-209ENST00000486618 LY6G5CQ5SRR4 150 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms