RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 LMAN2Q12907 356 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 ZNF235Q14590 738 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 SLMAPQ14BN4 828 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 AAK1Q2M2I8 961 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 ITPRIPL2Q3MIP1 535 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 FSCBQ5H9T9 825 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 PITRM1Q5JRX3 1037 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 SPDYCQ5MJ68 293 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 RNASEH2BQ5TBB1 312 aaKnown RBP10.35□□□□□ -0.75
USP39-215ENST00000481409 IZUMO3Q5VZ72 239 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 PARM1Q6UWI2 310 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 LINC00523Q86TU6 105 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 RELL1Q8IUW5 271 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 TP53INP2Q8IXH6 220 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 OR7D4Q8NG98 312 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 FGF14Q92915 247 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 TTC17Q96AE7 1141 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 FMO2Q99518 471 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 MGME1Q9BQP7 344 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 SPON2Q9BUD6 331 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 SLC25A51Q9H1U9 297 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 GLOD4Q9HC38 313 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 RAB6BQ9NRW1 208 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 RBM22Q9NW64 420 aaKnown RBP eCLIP10.35□□□□□ -0.75
USP39-215ENST00000481409 GRHL1Q9NZI5 618 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 SEPT10Q9P0V9 454 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 DEC1Q9P2X7 70 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 PRKAG3Q9UGI9 489 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 RSPH14Q9UHP6 348 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 SLC25A13Q9UJS0 675 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 ANAPC5Q9UJX4 755 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 HS3ST2Q9Y278 367 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 SNX24Q9Y343 169 aa10.35□□□□□ -0.75
USP39-215ENST00000481409 SHROOM3Q8TF72 1996 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 E7EVH7 732 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 J3KR12 359 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 CBX4O00257 560 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 ARNTLO00327 626 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 ZBTB24O43167 697 aaPredicted RBP10.34□□□□□ -0.75
USP39-215ENST00000481409 SUN1O94901 812 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 EPOP01588 193 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 CISD3P0C7P0 127 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 POLR2EP19388 210 aaKnown RBP10.34□□□□□ -0.75
USP39-215ENST00000481409 CA4P22748 312 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 MZF1P28698 734 aaPredicted RBP10.34□□□□□ -0.75
USP39-215ENST00000481409 HLA-FP30511 346 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 GDI1P31150 447 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 SERPINH1P50454 418 aaKnown RBP10.34□□□□□ -0.75
USP39-215ENST00000481409 ITGA8P53708 1063 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 VSNL1P62760 191 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 BASP1P80723 227 aaKnown RBP10.34□□□□□ -0.75
USP39-215ENST00000481409 ZBTB17Q13105 803 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 MPP3Q13368 585 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 HLTFQ14527 1009 aaKnown RBP eCLIP10.34□□□□□ -0.75
USP39-215ENST00000481409 KCNJ11Q14654 390 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 GRM3Q14832 879 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 GRAMD4Q6IC98 578 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 NAPEPLDQ6IQ20 393 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 CNPY4Q8N129 248 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 ZCCHC9Q8N567 271 aaKnown RBP10.34□□□□□ -0.75
USP39-215ENST00000481409 NAT8LQ8N9F0 302 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 GLIS1Q8NBF1 620 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 OR52K2Q8NGK3 314 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 CCDC110Q8TBZ0 833 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 KCNV2Q8TDN2 545 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 CSGALNACT1Q8TDX6 532 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 UCMAQ8WVF2 138 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 IFT81Q8WYA0 676 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 CPT1BQ92523 772 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 LRRC39Q96DD0 335 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 PNKPQ96T60 521 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 CINPQ9BW66 212 aaPredicted RBP10.34□□□□□ -0.75
USP39-215ENST00000481409 DPH5Q9H2P9 285 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 EBF3Q9H4W6 596 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 C8orf33Q9H7E9 229 aaPredicted RBP10.34□□□□□ -0.75
USP39-215ENST00000481409 BRD9Q9H8M2 597 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 LRRC40Q9H9A6 602 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 ETNK1Q9HBU6 452 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 XAB2Q9HCS7 855 aaKnown RBP10.34□□□□□ -0.75
USP39-215ENST00000481409 HPS4Q9NQG7 708 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 ZDHHC18Q9NUE0 388 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 PLK2Q9NYY3 685 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.34□□□□□ -0.75
USP39-215ENST00000481409 VPS51Q9UID3 782 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 CDH22Q9UJ99 828 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 ARIH1Q9Y4X5 557 aaPredicted RBP10.34□□□□□ -0.75
USP39-215ENST00000481409 NUMBLQ9Y6R0 609 aa10.34□□□□□ -0.75
USP39-215ENST00000481409 V9GYY5 206 aaPredicted RBP10.34□□□□□ -0.75
USP39-215ENST00000481409 A0A1W2PQ67 120 aa10.33□□□□□ -0.76
USP39-215ENST00000481409 SCAMP3O14828 347 aaKnown RBP10.33□□□□□ -0.76
USP39-215ENST00000481409 TULP3O75386 442 aa10.33□□□□□ -0.76
USP39-215ENST00000481409 AP2A1O95782 977 aa10.33□□□□□ -0.76
USP39-215ENST00000481409 ZSCAN5DPP0CG00 497 aa10.33□□□□□ -0.76
USP39-215ENST00000481409 ETS1P14921 441 aa10.33□□□□□ -0.76
USP39-215ENST00000481409 H2AFXP16104 143 aaPredicted RBP10.33□□□□□ -0.76
USP39-215ENST00000481409 CD70P32970 193 aa10.33□□□□□ -0.76
USP39-215ENST00000481409 TNNT3P45378 269 aaPredicted RBP10.33□□□□□ -0.76
USP39-215ENST00000481409 LMAN1P49257 510 aa10.33□□□□□ -0.76
USP39-215ENST00000481409 CARSP49589 748 aaKnown RBP10.33□□□□□ -0.76
USP39-215ENST00000481409 PLTPP55058 493 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms