RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 CST8O60676 142 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 KITP10721 976 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 S100A1P23297 94 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 ADORA2AP29274 412 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 ATP5OP48047 213 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 ZBTB17Q13105 803 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 USP4Q13107 963 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 PHKG1Q16816 387 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 FAM182BQ5T319 152 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 LLGL2Q6P1M3 1020 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 CPA6Q8N4T0 437 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 FAM181AQ8N9Y4 354 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 KYQ8NBH2 561 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 PDZD8Q8NEN9 1154 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 CHURC1Q8WUH1 139 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 KLHL32Q96NJ5 620 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 TSGA13Q96PP4 275 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 PEBP4Q96S96 227 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 HAUS8Q9BT25 410 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 ASB7Q9H672 318 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 DCDC2Q9UHG0 476 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 TYW5A2RUC4 315 aaKnown RBP5.44□□□□□ -1.54
SYNE1-220ENST00000471834 H3BRJ5 948 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 ENTPD1P49961 510 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 NFATC3Q12968 1075 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 ITGA7Q13683 1181 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 RPS6KA2Q15349 733 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 SURF1Q15526 300 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 TRIP10Q15642 601 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 AMHR2Q16671 573 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 RALGPS1Q5JS13 557 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 CENPLQ8N0S6 344 aaPredicted RBP5.44□□□□□ -1.54
SYNE1-220ENST00000471834 ANKRD36BP1Q96IX9 119 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 SPATA17Q96L03 361 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 MYRFLQ96LU7 910 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 FAM161BQ96MY7 647 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 TM9SF3Q9HD45 589 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 MRPL40Q9NQ50 206 aaKnown RBP5.44□□□□□ -1.54
SYNE1-220ENST00000471834 C1orf112Q9NSG2 853 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 SPATA7Q9P0W8 599 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 NEU3Q9UQ49 428 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 BBIP1A8MTZ0 92 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 H3BMQ9 156 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 ACKR2O00590 384 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 HOXD12P35452 270 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 LEPRP48357 1165 aaKnown RBP5.44□□□□□ -1.54
SYNE1-220ENST00000471834 NR2C2P49116 596 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 PRKAA1Q13131 559 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 TRMT10BQ6PF06 316 aaKnown RBP5.44□□□□□ -1.54
SYNE1-220ENST00000471834 CEP68Q76N32 757 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 CLEC10AQ8IUN9 316 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 RYBPQ8N488 228 aaPredicted RBP5.44□□□□□ -1.54
SYNE1-220ENST00000471834 JOSD2Q8TAC2 188 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 PLEKHA8Q96JA3 519 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 COG8Q96MW5 612 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 ZNF300Q96RE9 604 aaPredicted RBP5.44□□□□□ -1.54
SYNE1-220ENST00000471834 ASIC5Q9NY37 505 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 PCDHA10Q9Y5I2 948 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 GOLGA8TH3BQL2 631 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 COPEO14579 308 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 EPHA3P29320 983 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 HIRAP54198 1017 aaPredicted RBP5.44□□□□□ -1.54
SYNE1-220ENST00000471834 ADARP55265 1226 aaKnown RBP5.44□□□□□ -1.54
SYNE1-220ENST00000471834 KIZQ2M2Z5 673 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 CYBRD1Q53TN4 286 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 RBM44Q6ZP01 1051 aaKnown RBP5.44□□□□□ -1.54
SYNE1-220ENST00000471834 TRPV3Q8NET8 790 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 TNIP2Q8NFZ5 429 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 PHF10Q8WUB8 498 aaKnown RBP5.44□□□□□ -1.54
SYNE1-220ENST00000471834 HDAC2Q92769 488 aaKnown RBP5.44□□□□□ -1.54
SYNE1-220ENST00000471834 CCDC127Q96BQ5 260 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 CACYBPQ9HB71 228 aaKnown RBP5.44□□□□□ -1.54
SYNE1-220ENST00000471834 IFT122Q9HBG6 1241 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 CYP26B1Q9NR63 512 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 DNAJC17Q9NVM6 304 aaKnown RBP5.44□□□□□ -1.54
SYNE1-220ENST00000471834 FRMD4AQ9P2Q2 1039 aaPredicted RBP5.44□□□□□ -1.54
SYNE1-220ENST00000471834 MORF4L1Q9UBU8 362 aa5.44□□□□□ -1.54
SYNE1-220ENST00000471834 ZNF214Q9UL59 606 aaPredicted RBP5.44□□□□□ -1.54
SYNE1-220ENST00000471834 CCDC195A0A1B0GUA6 201 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 SPATA31C2B4DYI2 1134 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 CYB561D2O14569 222 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 LGR5O75473 907 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 TRUB2O95900 331 aaKnown RBP5.43□□□□□ -1.54
SYNE1-220ENST00000471834 IFNB1P01574 187 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 CD40LGP29965 261 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 POLR2BP30876 1174 aaKnown RBP5.43□□□□□ -1.54
SYNE1-220ENST00000471834 ARPP19P56211 112 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 OVGP1Q12889 678 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 GPS1Q13098 491 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 CTF1Q16619 201 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 DDR2Q16832 855 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 ARL13BQ3SXY8 428 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 MTERF2Q49AM1 385 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 FASTKD1Q53R41 847 aaKnown RBP5.43□□□□□ -1.54
SYNE1-220ENST00000471834 SLC30A10Q6XR72 485 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 TRIM67Q6ZTA4 783 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 STRADAQ7RTN6 431 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 OR5B17Q8NGF7 314 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 NLRP7Q8WX94 980 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 PPP1R10Q96QC0 940 aaKnown RBP5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms