RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 FAM208BQ5VWN6 2430 aa16.67■□□□□ 0.26
COL9A3-208ENST00000469802 TCRBV5S1A1TA0A578 114 aa16.66■□□□□ 0.26
COL9A3-208ENST00000469802 TLR4O00206 839 aa16.66■□□□□ 0.26
COL9A3-208ENST00000469802 BNIP3LO60238 219 aa16.66■□□□□ 0.26
COL9A3-208ENST00000469802 MBD3O95983 291 aa16.66■□□□□ 0.26
COL9A3-208ENST00000469802 PRNPP04156 253 aa16.66■□□□□ 0.26
COL9A3-208ENST00000469802 EPHA8P29322 1005 aaPredicted RBP16.66■□□□□ 0.26
COL9A3-208ENST00000469802 NSFP46459 744 aaKnown RBP16.66■□□□□ 0.26
COL9A3-208ENST00000469802 HDAC4P56524 1084 aa16.66■□□□□ 0.26
COL9A3-208ENST00000469802 SLC45A4Q5BKX6 768 aa16.66■□□□□ 0.26
COL9A3-208ENST00000469802 RETSATQ6NUM9 610 aa16.66■□□□□ 0.26
COL9A3-208ENST00000469802 MON1BQ7L1V2 547 aa16.66■□□□□ 0.26
COL9A3-208ENST00000469802 PRPF39Q86UA1 669 aaKnown RBP16.66■□□□□ 0.26
COL9A3-208ENST00000469802 NLRP14Q86W24 1093 aa16.66■□□□□ 0.26
COL9A3-208ENST00000469802 TMEM145Q8NBT3 493 aa16.66■□□□□ 0.26
COL9A3-208ENST00000469802 C3orf20Q8ND61 904 aa16.66■□□□□ 0.26
COL9A3-208ENST00000469802 OSBPL2Q9H1P3 480 aa16.66■□□□□ 0.26
COL9A3-208ENST00000469802 RETREG1Q9H6L5 497 aa16.66■□□□□ 0.26
COL9A3-208ENST00000469802 ATP13A1Q9HD20 1204 aa16.66■□□□□ 0.26
COL9A3-208ENST00000469802 OR12D3Q9UGF7 316 aa16.66■□□□□ 0.26
COL9A3-208ENST00000469802 FARP1Q9Y4F1 1045 aaPredicted RBP16.66■□□□□ 0.26
COL9A3-208ENST00000469802 WASF2Q9Y6W5 498 aa16.66■□□□□ 0.26
COL9A3-208ENST00000469802 MYLKQ15746 1914 aa16.65■□□□□ 0.26
COL9A3-208ENST00000469802 FAM72CH0Y354 149 aa16.65■□□□□ 0.26
COL9A3-208ENST00000469802 GOLGA6L22H0YM25 854 aa16.65■□□□□ 0.26
COL9A3-208ENST00000469802 CBX4O00257 560 aa16.65■□□□□ 0.26
COL9A3-208ENST00000469802 CD160O95971 181 aa16.65■□□□□ 0.26
COL9A3-208ENST00000469802 MAT2AP31153 395 aaKnown RBP16.65■□□□□ 0.26
COL9A3-208ENST00000469802 RFC1P35251 1148 aaPredicted RBP16.65■□□□□ 0.26
COL9A3-208ENST00000469802 MAPKAPK2P49137 400 aa16.65■□□□□ 0.26
COL9A3-208ENST00000469802 UBXN1Q04323 297 aa16.65■□□□□ 0.26
COL9A3-208ENST00000469802 SLC20A2Q08357 652 aa16.65■□□□□ 0.26
COL9A3-208ENST00000469802 SCAPQ12770 1279 aa16.65■□□□□ 0.26
COL9A3-208ENST00000469802 OVGP1Q12889 678 aa16.65■□□□□ 0.26
COL9A3-208ENST00000469802 ARL13BQ3SXY8 428 aa16.65■□□□□ 0.26
COL9A3-208ENST00000469802 SETMARQ53H47 684 aaPredicted RBP16.65■□□□□ 0.26
COL9A3-208ENST00000469802 PRAMEF14Q5SWL7 426 aa16.65■□□□□ 0.26
COL9A3-208ENST00000469802 CCDC183Q5T5S1 534 aa16.65■□□□□ 0.26
COL9A3-208ENST00000469802 FAM72AQ5TYM5 149 aa16.65■□□□□ 0.26
COL9A3-208ENST00000469802 FAM72DQ6L9T8 149 aa16.65■□□□□ 0.26
COL9A3-208ENST00000469802 NEK5Q6P3R8 708 aa16.65■□□□□ 0.26
COL9A3-208ENST00000469802 DPY19L3Q6ZPD9 716 aa16.65■□□□□ 0.26
COL9A3-208ENST00000469802 TMPRSS7Q7RTY8 843 aa16.65■□□□□ 0.26
COL9A3-208ENST00000469802 KANSL1Q7Z3B3 1105 aa16.65■□□□□ 0.26
COL9A3-208ENST00000469802 PHLDB2Q86SQ0 1253 aa16.65■□□□□ 0.26
COL9A3-208ENST00000469802 FAM72BQ86X60 149 aa16.65■□□□□ 0.26
COL9A3-208ENST00000469802 SPATS2Q86XZ4 545 aaKnown RBP16.65■□□□□ 0.26
COL9A3-208ENST00000469802 GATAD2AQ86YP4 633 aa16.65■□□□□ 0.26
COL9A3-208ENST00000469802 DRC7Q8IY82 874 aa16.65■□□□□ 0.26
COL9A3-208ENST00000469802 PCDH20Q8N6Y1 951 aaKnown RBP16.65■□□□□ 0.26
COL9A3-208ENST00000469802 CCDC185Q8N715 623 aa16.65■□□□□ 0.26
COL9A3-208ENST00000469802 NTAN1Q96AB6 310 aa16.65■□□□□ 0.26
COL9A3-208ENST00000469802 HDAC8Q9BY41 377 aa16.65■□□□□ 0.26
COL9A3-208ENST00000469802 TNKS2Q9H2K2 1166 aa16.65■□□□□ 0.26
COL9A3-208ENST00000469802 NDFIP2Q9NV92 336 aa16.65■□□□□ 0.26
COL9A3-208ENST00000469802 TMEM248Q9NWD8 314 aa16.65■□□□□ 0.26
COL9A3-208ENST00000469802 ADAM22Q9P0K1 906 aa16.65■□□□□ 0.26
COL9A3-208ENST00000469802 TDRD6O60522 2096 aaKnown RBP16.65■□□□□ 0.26
COL9A3-208ENST00000469802 GOLGA4Q13439 2230 aaKnown RBP16.64■□□□□ 0.25
COL9A3-208ENST00000469802 SRRM3A6NNA2 597 aaPredicted RBP16.64■□□□□ 0.25
COL9A3-208ENST00000469802 PRAMEF26H0Y7S4 382 aa16.64■□□□□ 0.25
COL9A3-208ENST00000469802 KPNA3O00505 521 aaPredicted RBP16.64■□□□□ 0.25
COL9A3-208ENST00000469802 LRIG2O94898 1065 aa16.64■□□□□ 0.25
COL9A3-208ENST00000469802 CALB1P05937 261 aa16.64■□□□□ 0.25
COL9A3-208ENST00000469802 KRT3P12035 628 aa16.64■□□□□ 0.25
COL9A3-208ENST00000469802 RHOQP17081 205 aa16.64■□□□□ 0.25
COL9A3-208ENST00000469802 RXRGP48443 463 aa16.64■□□□□ 0.25
COL9A3-208ENST00000469802 ARRB1P49407 418 aaPredicted RBP16.64■□□□□ 0.25
COL9A3-208ENST00000469802 SFMBT2Q5VUG0 894 aa16.64■□□□□ 0.25
COL9A3-208ENST00000469802 OXR1Q8N573 874 aa16.64■□□□□ 0.25
COL9A3-208ENST00000469802 GRIN3AQ8TCU5 1115 aa16.64■□□□□ 0.25
COL9A3-208ENST00000469802 FAM172AQ8WUF8 416 aa16.64■□□□□ 0.25
COL9A3-208ENST00000469802 SYT11Q9BT88 431 aa16.64■□□□□ 0.25
COL9A3-208ENST00000469802 SPON2Q9BUD6 331 aa16.64■□□□□ 0.25
COL9A3-208ENST00000469802 FTSJ1Q9UET6 329 aa16.64■□□□□ 0.25
COL9A3-208ENST00000469802 IL36AQ9UHA7 158 aa16.64■□□□□ 0.25
COL9A3-208ENST00000469802 SIGLEC16A6NMB1 481 aa16.63■□□□□ 0.25
COL9A3-208ENST00000469802 RNGTTO60942 597 aaKnown RBP16.63■□□□□ 0.25
COL9A3-208ENST00000469802 LEFTY1O75610 366 aa16.63■□□□□ 0.25
COL9A3-208ENST00000469802 ATP1A3P13637 1013 aa16.63■□□□□ 0.25
COL9A3-208ENST00000469802 GPD1P21695 349 aa16.63■□□□□ 0.25
COL9A3-208ENST00000469802 ITGB7P26010 798 aa16.63■□□□□ 0.25
COL9A3-208ENST00000469802 ACVRL1P37023 503 aa16.63■□□□□ 0.25
COL9A3-208ENST00000469802 ETFBP38117 255 aa16.63■□□□□ 0.25
COL9A3-208ENST00000469802 TYRO3Q06418 890 aa16.63■□□□□ 0.25
COL9A3-208ENST00000469802 C1QBPQ07021 282 aaKnown RBP16.63■□□□□ 0.25
COL9A3-208ENST00000469802 CCDC15Q0P6D6 951 aa16.63■□□□□ 0.25
COL9A3-208ENST00000469802 ZNF284Q2VY69 593 aa16.63■□□□□ 0.25
COL9A3-208ENST00000469802 TMEM259Q4ZIN3 620 aa16.63■□□□□ 0.25
COL9A3-208ENST00000469802 PPP1R15BQ5SWA1 713 aa16.63■□□□□ 0.25
COL9A3-208ENST00000469802 WDR59Q6PJI9 974 aa16.63■□□□□ 0.25
COL9A3-208ENST00000469802 ERN2Q76MJ5 926 aaKnown RBP16.63■□□□□ 0.25
COL9A3-208ENST00000469802 HORMAD1Q86X24 394 aa16.63■□□□□ 0.25
COL9A3-208ENST00000469802 PROSER1Q86XN7 944 aa16.63■□□□□ 0.25
COL9A3-208ENST00000469802 PLPP6Q8IY26 295 aa16.63■□□□□ 0.25
COL9A3-208ENST00000469802 AOPEPQ8N6M6 819 aa16.63■□□□□ 0.25
COL9A3-208ENST00000469802 ARHGEF2Q92974 986 aaKnown RBP16.63■□□□□ 0.25
COL9A3-208ENST00000469802 VOPP1Q96AW1 172 aa16.63■□□□□ 0.25
COL9A3-208ENST00000469802 ISG20Q96AZ6 181 aaKnown RBP16.63■□□□□ 0.25
COL9A3-208ENST00000469802 PPP1R16AQ96I34 528 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms