RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 PYGBP11216 843 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 MX2P20592 715 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 CNR2P34972 360 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 DNA2P51530 1060 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 COPS2P61201 443 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 RPS14P62263 151 aaKnown RBP12.17□□□□□ -0.46
VPS13D-204ENST00000469054 GBE1Q04446 702 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 ZBTB16Q05516 673 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 IL10RBQ08334 325 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 GALNT2Q10471 571 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 SLC10A2Q12908 348 aaPredicted RBP12.17□□□□□ -0.46
VPS13D-204ENST00000469054 TFDP2Q14188 446 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 LLGL1Q15334 1064 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 PPP2R5EQ16537 467 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 USP39Q53GS9 565 aaKnown RBP12.17□□□□□ -0.46
VPS13D-204ENST00000469054 TFDP3Q5H9I0 405 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 ZNF776Q68DI1 518 aaPredicted RBP12.17□□□□□ -0.46
VPS13D-204ENST00000469054 C22orf39Q6P5X5 142 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 ZC3H14Q6PJT7 736 aaKnown RBP12.17□□□□□ -0.46
VPS13D-204ENST00000469054 KIAA1324Q6UXG2 1013 aaKnown RBP12.17□□□□□ -0.46
VPS13D-204ENST00000469054 MMAAQ8IVH4 418 aaKnown RBP12.17□□□□□ -0.46
VPS13D-204ENST00000469054 CCDC50Q8IVM0 306 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 REXO1L1PQ8IX06 675 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 PLPP6Q8IY26 295 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 ATPAF2Q8N5M1 289 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 UBL4BQ8N7F7 174 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 PLD5Q8N7P1 536 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 OR2A12Q8NGT7 310 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 OR8D1Q8WZ84 308 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 ALG3Q92685 438 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 HES6Q96HZ4 224 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 CCDC114Q96M63 670 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 ALS2CR12Q96Q35 445 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 RSPH9Q9H1X1 276 aaPredicted RBP12.17□□□□□ -0.46
VPS13D-204ENST00000469054 TNKS2Q9H2K2 1166 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 SP110Q9HB58 689 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 DTLQ9NZJ0 730 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 RAPGEFL1Q9UHV5 662 aa12.17□□□□□ -0.46
VPS13D-204ENST00000469054 PACSIN2Q9UNF0 486 aaPredicted RBP12.17□□□□□ -0.46
VPS13D-204ENST00000469054 DOCK4Q8N1I0 1966 aa12.16□□□□□ -0.46
VPS13D-204ENST00000469054 hCG_1818297A0A087WSY0 165 aa12.16□□□□□ -0.46
VPS13D-204ENST00000469054 ALOX15BO15296 676 aa12.16□□□□□ -0.46
VPS13D-204ENST00000469054 DDX3YO15523 660 aaKnown RBP12.16□□□□□ -0.46
VPS13D-204ENST00000469054 HRO43593 1189 aa12.16□□□□□ -0.46
VPS13D-204ENST00000469054 MAFKO60675 156 aa12.16□□□□□ -0.46
VPS13D-204ENST00000469054 CST8O60676 142 aa12.16□□□□□ -0.46
VPS13D-204ENST00000469054 RNASEH1O60930 286 aaKnown RBP12.16□□□□□ -0.46
VPS13D-204ENST00000469054 ZNF217O75362 1048 aa12.16□□□□□ -0.46
VPS13D-204ENST00000469054 TMCC1O94876 653 aa12.16□□□□□ -0.46
VPS13D-204ENST00000469054 MAP3K6O95382 1288 aa12.16□□□□□ -0.46
VPS13D-204ENST00000469054 ACADMP11310 421 aa12.16□□□□□ -0.46
VPS13D-204ENST00000469054 KRT10P13645 584 aa12.16□□□□□ -0.46
VPS13D-204ENST00000469054 GARSP41250 739 aaKnown RBP12.16□□□□□ -0.46
VPS13D-204ENST00000469054 RECQLP46063 649 aaPredicted RBP12.16□□□□□ -0.46
VPS13D-204ENST00000469054 SNRPD1P62314 119 aaKnown RBP12.16□□□□□ -0.46
VPS13D-204ENST00000469054 BYSLQ13895 437 aaKnown RBP12.16□□□□□ -0.46
VPS13D-204ENST00000469054 RFTN1Q14699 578 aaPredicted RBP12.16□□□□□ -0.46
VPS13D-204ENST00000469054 CYTH1Q15438 398 aa12.16□□□□□ -0.46
VPS13D-204ENST00000469054 MAP7D1Q3KQU3 841 aa12.16□□□□□ -0.46
VPS13D-204ENST00000469054 CARD16Q5EG05 197 aa12.16□□□□□ -0.46
VPS13D-204ENST00000469054 KAZNQ674X7 775 aa12.16□□□□□ -0.46
VPS13D-204ENST00000469054 DPY19L3Q6ZPD9 716 aa12.16□□□□□ -0.46
VPS13D-204ENST00000469054 TRIM58Q8NG06 486 aa12.16□□□□□ -0.46
VPS13D-204ENST00000469054 GAB3Q8WWW8 586 aa12.16□□□□□ -0.46
VPS13D-204ENST00000469054 RLN3Q8WXF3 142 aa12.16□□□□□ -0.46
VPS13D-204ENST00000469054 ZNF599Q96NL3 588 aa12.16□□□□□ -0.46
VPS13D-204ENST00000469054 TM6SF2Q9BZW4 377 aa12.16□□□□□ -0.46
VPS13D-204ENST00000469054 ITM2CQ9NQX7 267 aa12.16□□□□□ -0.46
VPS13D-204ENST00000469054 PPM1HQ9ULR3 514 aa12.16□□□□□ -0.46
VPS13D-204ENST00000469054 EFR3BQ9Y2G0 817 aa12.16□□□□□ -0.46
VPS13D-204ENST00000469054 R4GN57 208 aa12.16□□□□□ -0.46
VPS13D-204ENST00000469054 MAP3K13O43283 966 aa12.15□□□□□ -0.46
VPS13D-204ENST00000469054 RPP40O75818 363 aaKnown RBP12.15□□□□□ -0.46
VPS13D-204ENST00000469054 GSRP00390 522 aa12.15□□□□□ -0.46
VPS13D-204ENST00000469054 IL1BP01584 269 aa12.15□□□□□ -0.46
VPS13D-204ENST00000469054 DNTTP04053 509 aa12.15□□□□□ -0.46
VPS13D-204ENST00000469054 PYGMP11217 842 aa12.15□□□□□ -0.46
VPS13D-204ENST00000469054 TGM2P21980 687 aa12.15□□□□□ -0.46
VPS13D-204ENST00000469054 CHRNA3P32297 505 aa12.15□□□□□ -0.46
VPS13D-204ENST00000469054 PTPN7P35236 360 aa12.15□□□□□ -0.46
VPS13D-204ENST00000469054 CETN2P41208 172 aa12.15□□□□□ -0.46
VPS13D-204ENST00000469054 P2RY2P41231 377 aa12.15□□□□□ -0.46
VPS13D-204ENST00000469054 NR2C2P49116 596 aa12.15□□□□□ -0.46
VPS13D-204ENST00000469054 DYNLT1P63172 113 aa12.15□□□□□ -0.46
VPS13D-204ENST00000469054 ADCY2Q08462 1091 aa12.15□□□□□ -0.46
VPS13D-204ENST00000469054 SRSF5Q13243 272 aaKnown RBP12.15□□□□□ -0.46
VPS13D-204ENST00000469054 RPS6KA1Q15418 735 aa12.15□□□□□ -0.46
VPS13D-204ENST00000469054 CST6Q15828 149 aa12.15□□□□□ -0.46
VPS13D-204ENST00000469054 TTC31Q49AM3 519 aaPredicted RBP12.15□□□□□ -0.46
VPS13D-204ENST00000469054 BZW1Q7L1Q6 419 aaKnown RBP12.15□□□□□ -0.46
VPS13D-204ENST00000469054 DSG4Q86SJ6 1040 aa12.15□□□□□ -0.46
VPS13D-204ENST00000469054 CACUL1Q86Y37 369 aa12.15□□□□□ -0.46
VPS13D-204ENST00000469054 CHST14Q8NCH0 376 aa12.15□□□□□ -0.46
VPS13D-204ENST00000469054 OR2AP1Q8NGE2 309 aa12.15□□□□□ -0.46
VPS13D-204ENST00000469054 NSMCE1Q8WV22 266 aa12.15□□□□□ -0.46
VPS13D-204ENST00000469054 SPACA7Q96KW9 195 aa12.15□□□□□ -0.46
VPS13D-204ENST00000469054 TSGA13Q96PP4 275 aa12.15□□□□□ -0.46
VPS13D-204ENST00000469054 HEPHQ9BQS7 1158 aa12.15□□□□□ -0.46
VPS13D-204ENST00000469054 HEMGNQ9BXL5 484 aa12.15□□□□□ -0.46
VPS13D-204ENST00000469054 OSBPL8Q9BZF1 889 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms