RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 SLC1A1P43005 524 aa11.88□□□□□ -0.51
CUX1-207ENST00000465461 PTGER3P43115 390 aa11.88□□□□□ -0.51
CUX1-207ENST00000465461 DHPSP49366 369 aaPredicted RBP11.88□□□□□ -0.51
CUX1-207ENST00000465461 HADHBP55084 474 aaKnown RBP11.88□□□□□ -0.51
CUX1-207ENST00000465461 CCZ1BP86790 482 aa11.88□□□□□ -0.51
CUX1-207ENST00000465461 CCZ1P86791 482 aaPredicted RBP11.88□□□□□ -0.51
CUX1-207ENST00000465461 SLC20A2Q08357 652 aa11.88□□□□□ -0.51
CUX1-207ENST00000465461 PDK2Q15119 407 aa11.88□□□□□ -0.51
CUX1-207ENST00000465461 CARD16Q5EG05 197 aa11.88□□□□□ -0.51
CUX1-207ENST00000465461 ARSIQ5FYB1 569 aa11.88□□□□□ -0.51
CUX1-207ENST00000465461 NCBP2-AS2Q69YL0 99 aa11.88□□□□□ -0.51
CUX1-207ENST00000465461 DAAM2Q86T65 1068 aa11.88□□□□□ -0.51
CUX1-207ENST00000465461 RHOT1Q8IXI2 618 aa11.88□□□□□ -0.51
CUX1-207ENST00000465461 RYBPQ8N488 228 aaPredicted RBP11.88□□□□□ -0.51
CUX1-207ENST00000465461 HDDC3Q8N4P3 179 aa11.88□□□□□ -0.51
CUX1-207ENST00000465461 AADATQ8N5Z0 425 aa11.88□□□□□ -0.51
CUX1-207ENST00000465461 PQLC3Q8N755 202 aa11.88□□□□□ -0.51
CUX1-207ENST00000465461 GRIN3AQ8TCU5 1115 aa11.88□□□□□ -0.51
CUX1-207ENST00000465461 OR8D1Q8WZ84 308 aa11.88□□□□□ -0.51
CUX1-207ENST00000465461 KRT35Q92764 455 aa11.88□□□□□ -0.51
CUX1-207ENST00000465461 ZC3H10Q96K80 434 aaKnown RBP11.88□□□□□ -0.51
CUX1-207ENST00000465461 EXOC2Q96KP1 924 aa11.88□□□□□ -0.51
CUX1-207ENST00000465461 GPR174Q9BXC1 333 aa11.88□□□□□ -0.51
CUX1-207ENST00000465461 NEUROG2Q9H2A3 272 aa11.88□□□□□ -0.51
CUX1-207ENST00000465461 ARRDC1-AS1Q9H2J1 176 aa11.88□□□□□ -0.51
CUX1-207ENST00000465461 SEMA4AQ9H3S1 761 aa11.88□□□□□ -0.51
CUX1-207ENST00000465461 SMOC1Q9H4F8 434 aa11.88□□□□□ -0.51
CUX1-207ENST00000465461 PDFQ9HBH1 243 aa11.88□□□□□ -0.51
CUX1-207ENST00000465461 FBXL12Q9NXK8 326 aa11.88□□□□□ -0.51
CUX1-207ENST00000465461 WSB2Q9NYS7 404 aaPredicted RBP11.88□□□□□ -0.51
CUX1-207ENST00000465461 NCDNQ9UBB6 729 aa11.88□□□□□ -0.51
CUX1-207ENST00000465461 ADGRG1Q9Y653 693 aa11.88□□□□□ -0.51
CUX1-207ENST00000465461 THADAQ6YHU6 1953 aa11.88□□□□□ -0.51
CUX1-207ENST00000465461 USP34Q70CQ2 3546 aa11.88□□□□□ -0.51
CUX1-207ENST00000465461 ATXN2Q99700 1313 aaKnown RBP11.87□□□□□ -0.51
CUX1-207ENST00000465461 SDK1Q7Z5N4 2213 aa11.87□□□□□ -0.51
CUX1-207ENST00000465461 TTC24A2A3L6 582 aaPredicted RBP11.87□□□□□ -0.51
CUX1-207ENST00000465461 GRID2IPA4D2P6 1211 aa11.87□□□□□ -0.51
CUX1-207ENST00000465461 FAM47DPA6NHR8 397 aa11.87□□□□□ -0.51
CUX1-207ENST00000465461 MCF2LO15068 1137 aa11.87□□□□□ -0.51
CUX1-207ENST00000465461 INSIG1O15503 277 aa11.87□□□□□ -0.51
CUX1-207ENST00000465461 MFSD11O43934 449 aa11.87□□□□□ -0.51
CUX1-207ENST00000465461 PRAMEF11O60813 436 aa11.87□□□□□ -0.51
CUX1-207ENST00000465461 NDUFS2O75306 463 aa11.87□□□□□ -0.51
CUX1-207ENST00000465461 GJB3O75712 270 aa11.87□□□□□ -0.51
CUX1-207ENST00000465461 RNASEH2AO75792 299 aaKnown RBP11.87□□□□□ -0.51
CUX1-207ENST00000465461 RHOBTB1O94844 696 aa11.87□□□□□ -0.51
CUX1-207ENST00000465461 MAOBP27338 520 aa11.87□□□□□ -0.51
CUX1-207ENST00000465461 CLCN6P51797 869 aa11.87□□□□□ -0.51
CUX1-207ENST00000465461 ZNF135P52742 658 aaPredicted RBP11.87□□□□□ -0.51
CUX1-207ENST00000465461 CREB5Q02930 508 aa11.87□□□□□ -0.51
CUX1-207ENST00000465461 SPEM2Q0P670 501 aa11.87□□□□□ -0.51
CUX1-207ENST00000465461 BYSLQ13895 437 aaKnown RBP11.87□□□□□ -0.51
CUX1-207ENST00000465461 ELAVL3Q14576 367 aaKnown RBP11.87□□□□□ -0.51
CUX1-207ENST00000465461 PMS2CLQ68D20 193 aa11.87□□□□□ -0.51
CUX1-207ENST00000465461 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.87□□□□□ -0.51
CUX1-207ENST00000465461 METTL3Q86U44 580 aaKnown RBP11.87□□□□□ -0.51
CUX1-207ENST00000465461 SLC41A1Q8IVJ1 513 aa11.87□□□□□ -0.51
CUX1-207ENST00000465461 PIP4K2CQ8TBX8 421 aa11.87□□□□□ -0.51
CUX1-207ENST00000465461 ZNF830Q96NB3 372 aaPredicted RBP11.87□□□□□ -0.51
CUX1-207ENST00000465461 RNF157Q96PX1 679 aa11.87□□□□□ -0.51
CUX1-207ENST00000465461 OMDQ99983 421 aa11.87□□□□□ -0.51
CUX1-207ENST00000465461 ZNF670Q9BS34 389 aa11.87□□□□□ -0.51
CUX1-207ENST00000465461 CEP44Q9C0F1 390 aa11.87□□□□□ -0.51
CUX1-207ENST00000465461 ZDHHC6Q9H6R6 413 aa11.87□□□□□ -0.51
CUX1-207ENST00000465461 SP110Q9HB58 689 aa11.87□□□□□ -0.51
CUX1-207ENST00000465461 RCOR3Q9P2K3 495 aaPredicted RBP11.87□□□□□ -0.51
CUX1-207ENST00000465461 HECAQ9UBI9 543 aaPredicted RBP11.87□□□□□ -0.51
CUX1-207ENST00000465461 UBA2Q9UBT2 640 aaPredicted RBP11.87□□□□□ -0.51
CUX1-207ENST00000465461 IL36AQ9UHA7 158 aa11.87□□□□□ -0.51
CUX1-207ENST00000465461 IPO11Q9UI26 975 aaKnown RBP11.87□□□□□ -0.51
CUX1-207ENST00000465461 PPM1HQ9ULR3 514 aa11.87□□□□□ -0.51
CUX1-207ENST00000465461 WASF2Q9Y6W5 498 aa11.87□□□□□ -0.51
CUX1-207ENST00000465461 NUMA1Q14980 2115 aa11.86□□□□□ -0.51
CUX1-207ENST00000465461 BTNL10A8MVZ5 291 aa11.86□□□□□ -0.51
CUX1-207ENST00000465461 KPNA3O00505 521 aaPredicted RBP11.86□□□□□ -0.51
CUX1-207ENST00000465461 KRIT1O00522 736 aa11.86□□□□□ -0.51
CUX1-207ENST00000465461 LEFTY1O75610 366 aa11.86□□□□□ -0.51
CUX1-207ENST00000465461 PALMO75781 387 aa11.86□□□□□ -0.51
CUX1-207ENST00000465461 KRT10P13645 584 aa11.86□□□□□ -0.51
CUX1-207ENST00000465461 ITPKAP23677 461 aa11.86□□□□□ -0.51
CUX1-207ENST00000465461 DRD3P35462 400 aa11.86□□□□□ -0.51
CUX1-207ENST00000465461 RECQLP46063 649 aaPredicted RBP11.86□□□□□ -0.51
CUX1-207ENST00000465461 RGRP47804 291 aa11.86□□□□□ -0.51
CUX1-207ENST00000465461 CCNHP51946 323 aaPredicted RBP11.86□□□□□ -0.51
CUX1-207ENST00000465461 RHOAP61586 193 aa11.86□□□□□ -0.51
CUX1-207ENST00000465461 DYNLT1P63172 113 aa11.86□□□□□ -0.51
CUX1-207ENST00000465461 GBE1Q04446 702 aa11.86□□□□□ -0.51
CUX1-207ENST00000465461 KIF5AQ12840 1032 aa11.86□□□□□ -0.51
CUX1-207ENST00000465461 SLC10A2Q12908 348 aaPredicted RBP11.86□□□□□ -0.51
CUX1-207ENST00000465461 ELF2Q15723 593 aa11.86□□□□□ -0.51
CUX1-207ENST00000465461 TTC31Q49AM3 519 aaPredicted RBP11.86□□□□□ -0.51
CUX1-207ENST00000465461 LRRC38Q5VT99 294 aa11.86□□□□□ -0.51
CUX1-207ENST00000465461 KAZNQ674X7 775 aa11.86□□□□□ -0.51
CUX1-207ENST00000465461 LAIR1Q6GTX8 287 aa11.86□□□□□ -0.51
CUX1-207ENST00000465461 C11orf63Q6NUN7 778 aa11.86□□□□□ -0.51
CUX1-207ENST00000465461 MFSD7Q6UXD7 560 aa11.86□□□□□ -0.51
CUX1-207ENST00000465461 NPNTQ6UXI9 565 aa11.86□□□□□ -0.51
CUX1-207ENST00000465461 B4GALNT4Q76KP1 1039 aa11.86□□□□□ -0.51
CUX1-207ENST00000465461 LPCAT2Q7L5N7 544 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms