RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 SMAD1Q15797 465 aaKnown RBP23.27■■□□□ 1.32
PTPN4-207ENST00000460162 MANEALQ5VSG8 457 aa23.27■■□□□ 1.32
PTPN4-207ENST00000460162 SFMBT2Q5VUG0 894 aa23.27■■□□□ 1.32
PTPN4-207ENST00000460162 SPATS2Q86XZ4 545 aaKnown RBP23.27■■□□□ 1.32
PTPN4-207ENST00000460162 PCDH20Q8N6Y1 951 aaKnown RBP23.27■■□□□ 1.32
PTPN4-207ENST00000460162 ANKRD20A12PQ8NF67 263 aa23.27■■□□□ 1.32
PTPN4-207ENST00000460162 GRIN3AQ8TCU5 1115 aa23.27■■□□□ 1.32
PTPN4-207ENST00000460162 GPT2Q8TD30 523 aa23.27■■□□□ 1.32
PTPN4-207ENST00000460162 ARRDC3Q96B67 414 aa23.27■■□□□ 1.32
PTPN4-207ENST00000460162 RETREG1Q9H6L5 497 aa23.27■■□□□ 1.32
PTPN4-207ENST00000460162 FANCLQ9NW38 375 aa23.27■■□□□ 1.32
PTPN4-207ENST00000460162 IL36AQ9UHA7 158 aa23.27■■□□□ 1.32
PTPN4-207ENST00000460162 C2CD4BA6NLJ0 364 aa23.26■■□□□ 1.31
PTPN4-207ENST00000460162 TAF4O00268 1085 aa23.26■■□□□ 1.31
PTPN4-207ENST00000460162 ENC1O14682 589 aa23.26■■□□□ 1.31
PTPN4-207ENST00000460162 ARF5P84085 180 aa23.26■■□□□ 1.31
PTPN4-207ENST00000460162 MYL5Q02045 173 aa23.26■■□□□ 1.31
PTPN4-207ENST00000460162 CDO1Q16878 200 aa23.26■■□□□ 1.31
PTPN4-207ENST00000460162 ERN2Q76MJ5 926 aaKnown RBP23.26■■□□□ 1.31
PTPN4-207ENST00000460162 STRADAQ7RTN6 431 aa23.26■■□□□ 1.31
PTPN4-207ENST00000460162 TMEM145Q8NBT3 493 aa23.26■■□□□ 1.31
PTPN4-207ENST00000460162 CHST14Q8NCH0 376 aa23.26■■□□□ 1.31
PTPN4-207ENST00000460162 RXFP2Q8WXD0 754 aa23.26■■□□□ 1.31
PTPN4-207ENST00000460162 CNDP2Q96KP4 475 aaKnown RBP23.26■■□□□ 1.31
PTPN4-207ENST00000460162 SPON2Q9BUD6 331 aa23.26■■□□□ 1.31
PTPN4-207ENST00000460162 HDAC8Q9BY41 377 aa23.26■■□□□ 1.31
PTPN4-207ENST00000460162 TNKS2Q9H2K2 1166 aa23.26■■□□□ 1.31
PTPN4-207ENST00000460162 ANO10Q9NW15 660 aa23.26■■□□□ 1.31
PTPN4-207ENST00000460162 A0A1W2PQU0 124 aa23.25■■□□□ 1.31
PTPN4-207ENST00000460162 LGALS16A8MUM7 142 aa23.25■■□□□ 1.31
PTPN4-207ENST00000460162 LDOC1O95751 146 aaPredicted RBP23.25■■□□□ 1.31
PTPN4-207ENST00000460162 CDK4P11802 303 aa23.25■■□□□ 1.31
PTPN4-207ENST00000460162 UNGP13051 313 aaPredicted RBP23.25■■□□□ 1.31
PTPN4-207ENST00000460162 ADRA1BP35368 520 aa23.25■■□□□ 1.31
PTPN4-207ENST00000460162 NSFP46459 744 aaKnown RBP23.25■■□□□ 1.31
PTPN4-207ENST00000460162 MAPKAPK2P49137 400 aa23.25■■□□□ 1.31
PTPN4-207ENST00000460162 COPB1P53618 953 aaKnown RBP23.25■■□□□ 1.31
PTPN4-207ENST00000460162 SYCP1Q15431 976 aa23.25■■□□□ 1.31
PTPN4-207ENST00000460162 C15orf59Q2T9L4 293 aaPredicted RBP23.25■■□□□ 1.31
PTPN4-207ENST00000460162 CCDC14Q49A88 953 aa23.25■■□□□ 1.31
PTPN4-207ENST00000460162 CCDC157Q569K6 752 aa23.25■■□□□ 1.31
PTPN4-207ENST00000460162 DPY19L3Q6ZPD9 716 aa23.25■■□□□ 1.31
PTPN4-207ENST00000460162 HORMAD1Q86X24 394 aa23.25■■□□□ 1.31
PTPN4-207ENST00000460162 DRC7Q8IY82 874 aa23.25■■□□□ 1.31
PTPN4-207ENST00000460162 JOSD2Q8TAC2 188 aa23.25■■□□□ 1.31
PTPN4-207ENST00000460162 SLC30A5Q8TAD4 765 aa23.25■■□□□ 1.31
PTPN4-207ENST00000460162 DKK4Q9UBT3 224 aa23.25■■□□□ 1.31
PTPN4-207ENST00000460162 OR12D3Q9UGF7 316 aa23.25■■□□□ 1.31
PTPN4-207ENST00000460162 LIMA1Q9UHB6 759 aaKnown RBP23.25■■□□□ 1.31
PTPN4-207ENST00000460162 WASF2Q9Y6W5 498 aa23.25■■□□□ 1.31
PTPN4-207ENST00000460162 ACACAQ13085 2346 aa23.25■■□□□ 1.31
PTPN4-207ENST00000460162 APC2O95996 2303 aa23.24■■□□□ 1.31
PTPN4-207ENST00000460162 ZNF821O75541 412 aaPredicted RBP23.24■■□□□ 1.31
PTPN4-207ENST00000460162 LEFTY1O75610 366 aa23.24■■□□□ 1.31
PTPN4-207ENST00000460162 PTP4A2Q12974 167 aa23.24■■□□□ 1.31
PTPN4-207ENST00000460162 STX1AQ16623 288 aa23.24■■□□□ 1.31
PTPN4-207ENST00000460162 SASS6Q6UVJ0 657 aa23.24■■□□□ 1.31
PTPN4-207ENST00000460162 DHRS13Q6UX07 377 aa23.24■■□□□ 1.31
PTPN4-207ENST00000460162 KANSL1Q7Z3B3 1105 aa23.24■■□□□ 1.31
PTPN4-207ENST00000460162 EID2Q8N6I1 236 aa23.24■■□□□ 1.31
PTPN4-207ENST00000460162 NEK11Q8NG66 645 aa23.24■■□□□ 1.31
PTPN4-207ENST00000460162 OSBPL2Q9H1P3 480 aa23.24■■□□□ 1.31
PTPN4-207ENST00000460162 TMEM248Q9NWD8 314 aa23.24■■□□□ 1.31
PTPN4-207ENST00000460162 GOLGA4Q13439 2230 aaKnown RBP23.23■■□□□ 1.31
PTPN4-207ENST00000460162 RFPL3O75679 317 aa23.23■■□□□ 1.31
PTPN4-207ENST00000460162 C1SP09871 688 aa23.23■■□□□ 1.31
PTPN4-207ENST00000460162 PRLRP16471 622 aa23.23■■□□□ 1.31
PTPN4-207ENST00000460162 RHOQP17081 205 aa23.23■■□□□ 1.31
PTPN4-207ENST00000460162 HNRNPA2B1P22626 353 aaKnown RBP23.23■■□□□ 1.31
PTPN4-207ENST00000460162 ITGB7P26010 798 aa23.23■■□□□ 1.31
PTPN4-207ENST00000460162 AKT2P31751 481 aa23.23■■□□□ 1.31
PTPN4-207ENST00000460162 ACADVLP49748 655 aa23.23■■□□□ 1.31
PTPN4-207ENST00000460162 NEK3P51956 506 aa23.23■■□□□ 1.31
PTPN4-207ENST00000460162 GEMIN4P57678 1058 aaKnown RBP23.23■■□□□ 1.31
PTPN4-207ENST00000460162 ZNF284Q2VY69 593 aa23.23■■□□□ 1.31
PTPN4-207ENST00000460162 RAB6CQ53S08 254 aa23.23■■□□□ 1.31
PTPN4-207ENST00000460162 ARSIQ5FYB1 569 aa23.23■■□□□ 1.31
PTPN4-207ENST00000460162 NLRP14Q86W24 1093 aa23.23■■□□□ 1.31
PTPN4-207ENST00000460162 PHF13Q86YI8 300 aaPredicted RBP23.23■■□□□ 1.31
PTPN4-207ENST00000460162 C3orf20Q8ND61 904 aa23.23■■□□□ 1.31
PTPN4-207ENST00000460162 MDM1Q8TC05 714 aa23.23■■□□□ 1.31
PTPN4-207ENST00000460162 CENPIQ92674 756 aaPredicted RBP23.23■■□□□ 1.31
PTPN4-207ENST00000460162 NTAN1Q96AB6 310 aa23.23■■□□□ 1.31
PTPN4-207ENST00000460162 KLHDC7BQ96G42 594 aa23.23■■□□□ 1.31
PTPN4-207ENST00000460162 PCMTD1Q96MG8 357 aaPredicted RBP23.23■■□□□ 1.31
PTPN4-207ENST00000460162 RAB6CQ9H0N0 254 aa23.23■■□□□ 1.31
PTPN4-207ENST00000460162 NEU3Q9UQ49 428 aa23.23■■□□□ 1.31
PTPN4-207ENST00000460162 ITPR1Q14643 2758 aa23.23■■□□□ 1.31
PTPN4-207ENST00000460162 RNF103O00237 685 aa23.22■■□□□ 1.31
PTPN4-207ENST00000460162 CALB1P05937 261 aa23.22■■□□□ 1.31
PTPN4-207ENST00000460162 THEGLP0DJG4 465 aa23.22■■□□□ 1.31
PTPN4-207ENST00000460162 KRT3P12035 628 aa23.22■■□□□ 1.31
PTPN4-207ENST00000460162 CCNHP51946 323 aaPredicted RBP23.22■■□□□ 1.31
PTPN4-207ENST00000460162 HDAC4P56524 1084 aa23.22■■□□□ 1.31
PTPN4-207ENST00000460162 BNIP3Q12983 259 aa23.22■■□□□ 1.31
PTPN4-207ENST00000460162 CLEC16AQ2KHT3 1053 aa23.22■■□□□ 1.31
PTPN4-207ENST00000460162 CARD16Q5EG05 197 aa23.22■■□□□ 1.31
PTPN4-207ENST00000460162 RWDD4Q6NW29 188 aaKnown RBP23.22■■□□□ 1.31
PTPN4-207ENST00000460162 TMPRSS12Q86WS5 348 aa23.22■■□□□ 1.31
PTPN4-207ENST00000460162 FAM172AQ8WUF8 416 aa23.22■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms