RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 SIN3BO75182 1162 aa15.31■□□□□ 0.04
LDLR-202ENST00000455727 DDHD2O94830 711 aa15.31■□□□□ 0.04
LDLR-202ENST00000455727 MT-CYBP00156 380 aaPredicted RBP15.31■□□□□ 0.04
LDLR-202ENST00000455727 COL6A2P12110 1019 aa15.31■□□□□ 0.04
LDLR-202ENST00000455727 PRKAA2P54646 552 aa15.31■□□□□ 0.04
LDLR-202ENST00000455727 FAM189BP81408 668 aa15.31■□□□□ 0.04
LDLR-202ENST00000455727 GRM3Q14832 879 aa15.31■□□□□ 0.04
LDLR-202ENST00000455727 MAVSQ7Z434 540 aa15.31■□□□□ 0.04
LDLR-202ENST00000455727 TNS4Q8IZW8 715 aa15.31■□□□□ 0.04
LDLR-202ENST00000455727 NUP93Q8N1F7 819 aa15.31■□□□□ 0.04
LDLR-202ENST00000455727 ARHGAP18Q8N392 663 aa15.31■□□□□ 0.04
LDLR-202ENST00000455727 SLC39A13Q96H72 371 aa15.31■□□□□ 0.04
LDLR-202ENST00000455727 CAB39LQ9H9S4 337 aa15.31■□□□□ 0.04
LDLR-202ENST00000455727 MAGED2Q9UNF1 606 aaPredicted RBP15.31■□□□□ 0.04
LDLR-202ENST00000455727 PLA2G4CQ9UP65 541 aa15.31■□□□□ 0.04
LDLR-202ENST00000455727 RPSAP08865 295 aaKnown RBP15.3■□□□□ 0.04
LDLR-202ENST00000455727 PRKAR2AP13861 404 aaKnown RBP15.3■□□□□ 0.04
LDLR-202ENST00000455727 ELF1P32519 619 aa15.3■□□□□ 0.04
LDLR-202ENST00000455727 GMPRP36959 345 aa15.3■□□□□ 0.04
LDLR-202ENST00000455727 IRF9Q00978 393 aa15.3■□□□□ 0.04
LDLR-202ENST00000455727 DLG2Q15700 870 aa15.3■□□□□ 0.04
LDLR-202ENST00000455727 ACSBG2Q5FVE4 666 aa15.3■□□□□ 0.04
LDLR-202ENST00000455727 RANBP10Q6VN20 620 aa15.3■□□□□ 0.04
LDLR-202ENST00000455727 ZNF280BQ86YH2 543 aa15.3■□□□□ 0.04
LDLR-202ENST00000455727 SCN4BQ8IWT1 228 aa15.3■□□□□ 0.04
LDLR-202ENST00000455727 COLGALT2Q8IYK4 626 aa15.3■□□□□ 0.04
LDLR-202ENST00000455727 PPHLN1Q8NEY8 458 aaKnown RBP15.3■□□□□ 0.04
LDLR-202ENST00000455727 IPMKQ8NFU5 416 aa15.3■□□□□ 0.04
LDLR-202ENST00000455727 NDFIP2Q9NV92 336 aa15.3■□□□□ 0.04
LDLR-202ENST00000455727 RBM22Q9NW64 420 aaKnown RBP eCLIP15.3■□□□□ 0.042e-7■■■■□ 25.4
LDLR-202ENST00000455727 OXSMQ9NWU1 459 aa15.3■□□□□ 0.04
LDLR-202ENST00000455727 DONSONQ9NYP3 566 aa15.3■□□□□ 0.04
LDLR-202ENST00000455727 TLK1Q9UKI8 766 aa15.3■□□□□ 0.04
LDLR-202ENST00000455727 F8W8V4 182 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 B4GALT3O60512 393 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 TM7SF2O76062 418 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 ARCN1P48444 511 aaKnown RBP15.29■□□□□ 0.04
LDLR-202ENST00000455727 PAPOLAP51003 745 aaKnown RBP15.29■□□□□ 0.04
LDLR-202ENST00000455727 KDSRQ06136 332 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 RCN2Q14257 317 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 KPNB1Q14974 876 aaKnown RBP15.29■□□□□ 0.04
LDLR-202ENST00000455727 NOMO2Q5JPE7 1267 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 UMODL1-AS1Q8N2C9 162 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 FICDQ9BVA6 458 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 C1QTNF1Q9BXJ1 281 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 TBC1D13Q9NVG8 400 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 OSER1Q9NX31 292 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 STOML1Q9UBI4 398 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 SLC39A10Q9ULF5 831 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 TCAF1Q9Y4C2 921 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 MYLKQ15746 1914 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 TMEM88BA6NKF7 163 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 ALDH1A1P00352 501 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 AHSGP02765 367 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 HLA-DQB2P05538 268 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 OR4Q2P0C623 313 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 CKBP12277 381 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 CPA2P48052 419 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 NDST2P52849 883 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 ACLYP53396 1101 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 UBAP2LQ14157 1087 aaKnown RBP15.29■□□□□ 0.04
LDLR-202ENST00000455727 CLLU1OSQ5K130 101 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 TRAF7Q6Q0C0 670 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 C14orf80Q86SX3 495 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 RNF180Q86T96 592 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 TMEM151AQ8N4L1 468 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 GPATCH11Q8N954 259 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 ACVR1CQ8NER5 493 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 PRKD2Q9BZL6 878 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 ARNT2Q9HBZ2 717 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 ABI2Q9NYB9 513 aaPredicted RBP15.29■□□□□ 0.04
LDLR-202ENST00000455727 IL37Q9NZH6 218 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 IPO11Q9UI26 975 aaKnown RBP15.29■□□□□ 0.04
LDLR-202ENST00000455727 THSD7BQ9C0I4 1608 aa15.29■□□□□ 0.04
LDLR-202ENST00000455727 E2F8A0AVK6 867 aa15.28■□□□□ 0.04
LDLR-202ENST00000455727 GABRB3P28472 473 aa15.28■□□□□ 0.04
LDLR-202ENST00000455727 MAGEA11P43364 429 aa15.28■□□□□ 0.04
LDLR-202ENST00000455727 PTDSS1P48651 473 aaKnown RBP15.28■□□□□ 0.04
LDLR-202ENST00000455727 HK2P52789 917 aa15.28■□□□□ 0.04
LDLR-202ENST00000455727 SLC12A1Q13621 1099 aa15.28■□□□□ 0.04
LDLR-202ENST00000455727 HNRNPDQ14103 355 aaKnown RBP15.28■□□□□ 0.04
LDLR-202ENST00000455727 POU6F1Q14863 301 aa15.28■□□□□ 0.04
LDLR-202ENST00000455727 CMPK2Q5EBM0 449 aa15.28■□□□□ 0.04
LDLR-202ENST00000455727 METTL21CQ5VZV1 264 aa15.28■□□□□ 0.04
LDLR-202ENST00000455727 ZYG11AQ6WRX3 759 aa15.28■□□□□ 0.04
LDLR-202ENST00000455727 NAPRTQ6XQN6 538 aa15.28■□□□□ 0.04
LDLR-202ENST00000455727 NET1Q7Z628 596 aaPredicted RBP15.28■□□□□ 0.04
LDLR-202ENST00000455727 SCUBE1Q8IWY4 988 aa15.28■□□□□ 0.04
LDLR-202ENST00000455727 ZNF683Q8IZ20 524 aa15.28■□□□□ 0.04
LDLR-202ENST00000455727 MAB21L3Q8N8X9 362 aa15.28■□□□□ 0.04
LDLR-202ENST00000455727 FBXO27Q8NI29 283 aa15.28■□□□□ 0.04
LDLR-202ENST00000455727 WDR60Q8WVS4 1066 aa15.28■□□□□ 0.04
LDLR-202ENST00000455727 MRGPRX2Q96LB1 330 aa15.28■□□□□ 0.04
LDLR-202ENST00000455727 TSNARE1Q96NA8 513 aa15.28■□□□□ 0.04
LDLR-202ENST00000455727 ZNF570Q96NI8 536 aa15.28■□□□□ 0.04
LDLR-202ENST00000455727 ZIC5Q96T25 663 aa15.28■□□□□ 0.04
LDLR-202ENST00000455727 UBE2OQ9C0C9 1292 aaKnown RBP15.28■□□□□ 0.04
LDLR-202ENST00000455727 CDH19Q9H159 772 aa15.28■□□□□ 0.04
LDLR-202ENST00000455727 TREX1Q9NSU2 369 aa15.28■□□□□ 0.04
LDLR-202ENST00000455727 MIA3Q5JRA6 1907 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms