RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 MAML1Q92585 1016 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 PWWP2AQ96N64 755 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 IL12RB2Q99665 862 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 ERP44Q9BS26 406 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 TRMT61BQ9BVS5 477 aaKnown RBP11.2□□□□□ -0.62
SCN9A-205ENST00000454569 MUC3BQ9H195 1237 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 THG1LQ9NWX6 298 aaKnown RBP11.2□□□□□ -0.62
SCN9A-205ENST00000454569 GRHL1Q9NZI5 618 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 VPS51Q9UID3 782 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 TYW5A2RUC4 315 aaKnown RBP11.2□□□□□ -0.62
SCN9A-205ENST00000454569 C5orf60A6NFR6 353 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 FAM187AA6NFU0 413 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 PRRT4C9JH25 899 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 CBX4O00257 560 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 NCAM2O15394 837 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 SMAD6O43541 496 aaKnown RBP11.2□□□□□ -0.62
SCN9A-205ENST00000454569 CACNG3O60359 315 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 GCATO75600 419 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 HLA-DQB2P05538 268 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 BMP1P13497 986 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 CCNB1P14635 433 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 ECHS1P30084 290 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 STIP1P31948 543 aaKnown RBP11.2□□□□□ -0.62
SCN9A-205ENST00000454569 RGRP47804 291 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 CARSP49589 748 aaKnown RBP11.2□□□□□ -0.62
SCN9A-205ENST00000454569 STK19P49842 368 aaPredicted RBP11.2□□□□□ -0.62
SCN9A-205ENST00000454569 PLK1P53350 603 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 MAXP61244 160 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 VSNL1P62760 191 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 IL10RBQ08334 325 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 GPS1Q13098 491 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 OLIG2Q13516 323 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 PDGFRLQ15198 375 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 PPP1R7Q15435 360 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 CYTH1Q15438 398 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 QPCTQ16769 361 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 TMEM259Q4ZIN3 620 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 PITRM1Q5JRX3 1037 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 ANKRD22Q5VYY1 191 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 MAATS1Q7Z4T9 603 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 YAF2Q8IY57 180 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 PHTF2Q8N3S3 785 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 KIAA1958Q8N8K9 716 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 ATP2A3Q93084 1043 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 NXPE3Q969Y0 559 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 E2F7Q96AV8 911 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 RPL10LQ96L21 214 aaKnown RBP11.2□□□□□ -0.62
SCN9A-205ENST00000454569 AGAP3Q96P47 875 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 PARD6BQ9BYG5 372 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 RETREG1Q9H6L5 497 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 DNAJC17Q9NVM6 304 aaKnown RBP11.2□□□□□ -0.62
SCN9A-205ENST00000454569 VPS28Q9UK41 221 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 HCN2Q9UL51 889 aa11.2□□□□□ -0.62
SCN9A-205ENST00000454569 NFATC1O95644 943 aa11.19□□□□□ -0.62
SCN9A-205ENST00000454569 PABPC1P11940 636 aaKnown RBP11.19□□□□□ -0.62
SCN9A-205ENST00000454569 OXCT1P55809 520 aa11.19□□□□□ -0.62
SCN9A-205ENST00000454569 IFI35P80217 286 aaPredicted RBP11.19□□□□□ -0.62
SCN9A-205ENST00000454569 KDSRQ06136 332 aa11.19□□□□□ -0.62
SCN9A-205ENST00000454569 P3H1Q32P28 736 aa11.19□□□□□ -0.62
SCN9A-205ENST00000454569 GLE1Q53GS7 698 aaKnown RBP11.19□□□□□ -0.62
SCN9A-205ENST00000454569 TEX44Q53QW1 395 aa11.19□□□□□ -0.62
SCN9A-205ENST00000454569 CCDC70Q6NSX1 233 aa11.19□□□□□ -0.62
SCN9A-205ENST00000454569 TXNDC11Q6PKC3 985 aa11.19□□□□□ -0.62
SCN9A-205ENST00000454569 ZDHHC24Q6UX98 284 aa11.19□□□□□ -0.62
SCN9A-205ENST00000454569 MTSS1LQ765P7 747 aa11.19□□□□□ -0.62
SCN9A-205ENST00000454569 PID1Q7Z2X4 250 aa11.19□□□□□ -0.62
SCN9A-205ENST00000454569 RNF135Q8IUD6 432 aa11.19□□□□□ -0.62
SCN9A-205ENST00000454569 TEX26Q8N6G2 289 aa11.19□□□□□ -0.62
SCN9A-205ENST00000454569 GPR161Q8N6U8 529 aaKnown RBP11.19□□□□□ -0.62
SCN9A-205ENST00000454569 SEC14L1Q92503 715 aa11.19□□□□□ -0.62
SCN9A-205ENST00000454569 EZH1Q92800 747 aaPredicted RBP11.19□□□□□ -0.62
SCN9A-205ENST00000454569 TEKT5Q96M29 485 aa11.19□□□□□ -0.62
SCN9A-205ENST00000454569 SP110Q9HB58 689 aa11.19□□□□□ -0.62
SCN9A-205ENST00000454569 PCDH9Q9HC56 1237 aa11.19□□□□□ -0.62
SCN9A-205ENST00000454569 ZDHHC4Q9NPG8 344 aa11.19□□□□□ -0.62
SCN9A-205ENST00000454569 GDF3Q9NR23 364 aa11.19□□□□□ -0.62
SCN9A-205ENST00000454569 RBM22Q9NW64 420 aaKnown RBP eCLIP11.19□□□□□ -0.62
SCN9A-205ENST00000454569 KIAA1522Q9P206 1035 aaPredicted RBP11.19□□□□□ -0.62
SCN9A-205ENST00000454569 ASIC3Q9UHC3 531 aa11.19□□□□□ -0.62
SCN9A-205ENST00000454569 GGA2Q9UJY4 613 aa11.19□□□□□ -0.62
SCN9A-205ENST00000454569 A0A0A0MRY4 1105 aa11.18□□□□□ -0.62
SCN9A-205ENST00000454569 CFAP69A5D8W1 941 aa11.18□□□□□ -0.62
SCN9A-205ENST00000454569 SHISA7A6NL88 538 aa11.18□□□□□ -0.62
SCN9A-205ENST00000454569 ZNF821O75541 412 aaPredicted RBP11.18□□□□□ -0.62
SCN9A-205ENST00000454569 ADH1CP00326 375 aa11.18□□□□□ -0.62
SCN9A-205ENST00000454569 NFKB1P19838 968 aa11.18□□□□□ -0.62
SCN9A-205ENST00000454569 PSMB4P28070 264 aa11.18□□□□□ -0.62
SCN9A-205ENST00000454569 DGKGP49619 791 aa11.18□□□□□ -0.62
SCN9A-205ENST00000454569 LMNB2Q03252 620 aa11.18□□□□□ -0.62
SCN9A-205ENST00000454569 NIPAL4Q0D2K0 466 aa11.18□□□□□ -0.62
SCN9A-205ENST00000454569 LBRQ14739 615 aaKnown RBP11.18□□□□□ -0.62
SCN9A-205ENST00000454569 ZNF783Q6ZMS7 281 aa11.18□□□□□ -0.62
SCN9A-205ENST00000454569 CCDC89Q8N998 374 aa11.18□□□□□ -0.62
SCN9A-205ENST00000454569 TSEN2Q8NCE0 465 aaKnown RBP11.18□□□□□ -0.62
SCN9A-205ENST00000454569 SPATA22Q8NHS9 363 aa11.18□□□□□ -0.62
SCN9A-205ENST00000454569 GRK7Q8WTQ7 553 aa11.18□□□□□ -0.62
SCN9A-205ENST00000454569 CYB5D2Q8WUJ1 264 aa11.18□□□□□ -0.62
SCN9A-205ENST00000454569 CPT1BQ92523 772 aa11.18□□□□□ -0.62
SCN9A-205ENST00000454569 VOPP1Q96AW1 172 aa11.18□□□□□ -0.62
SCN9A-205ENST00000454569 SPATA13Q96N96 652 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms