RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 LMAN1LQ9HAT1 526 aa11.8□□□□□ -0.52
SCN9A-204ENST00000452182 UBA2Q9UBT2 640 aaPredicted RBP11.8□□□□□ -0.52
SCN9A-204ENST00000452182 AMACRQ9UHK6 382 aa11.8□□□□□ -0.52
SCN9A-204ENST00000452182 R3HDM2Q9Y2K5 976 aaKnown RBP11.8□□□□□ -0.52
SCN9A-204ENST00000452182 SIT1Q9Y3P8 196 aa11.8□□□□□ -0.52
SCN9A-204ENST00000452182 TECTAO75443 2155 aa11.79□□□□□ -0.52
SCN9A-204ENST00000452182 BCLAF3A2AJT9 711 aaKnown RBP11.79□□□□□ -0.52
SCN9A-204ENST00000452182 TMEM221A6NGB7 291 aa11.79□□□□□ -0.52
SCN9A-204ENST00000452182 M0R296 226 aa11.79□□□□□ -0.52
SCN9A-204ENST00000452182 RNF40O75150 1001 aa11.79□□□□□ -0.52
SCN9A-204ENST00000452182 MT-CO1P00395 513 aa11.79□□□□□ -0.52
SCN9A-204ENST00000452182 MAGEA9P43362 315 aa11.79□□□□□ -0.52
SCN9A-204ENST00000452182 NUMBP49757 651 aa11.79□□□□□ -0.52
SCN9A-204ENST00000452182 IFI35P80217 286 aaPredicted RBP11.79□□□□□ -0.52
SCN9A-204ENST00000452182 CYP1B1Q16678 543 aa11.79□□□□□ -0.52
SCN9A-204ENST00000452182 SERPINA13PQ6UXR4 307 aa11.79□□□□□ -0.52
SCN9A-204ENST00000452182 LINGO4Q6UY18 593 aa11.79□□□□□ -0.52
SCN9A-204ENST00000452182 ADAT2Q7Z6V5 191 aaKnown RBP11.79□□□□□ -0.52
SCN9A-204ENST00000452182 ZC3H18Q86VM9 953 aaKnown RBP11.79□□□□□ -0.52
SCN9A-204ENST00000452182 CDKL3Q8IVW4 592 aaPredicted RBP11.79□□□□□ -0.52
SCN9A-204ENST00000452182 CCDC105Q8IYK2 499 aa11.79□□□□□ -0.52
SCN9A-204ENST00000452182 CCDC33Q8N5R6 958 aa11.79□□□□□ -0.52
SCN9A-204ENST00000452182 TEX26Q8N6G2 289 aa11.79□□□□□ -0.52
SCN9A-204ENST00000452182 IL17RCQ8NAC3 791 aa11.79□□□□□ -0.52
SCN9A-204ENST00000452182 ATP11CQ8NB49 1132 aa11.79□□□□□ -0.52
SCN9A-204ENST00000452182 NSMCE1Q8WV22 266 aa11.79□□□□□ -0.52
SCN9A-204ENST00000452182 RPL10LQ96L21 214 aaKnown RBP11.79□□□□□ -0.52
SCN9A-204ENST00000452182 PSKH2Q96QS6 385 aa11.79□□□□□ -0.52
SCN9A-204ENST00000452182 VAT1Q99536 393 aa11.79□□□□□ -0.52
SCN9A-204ENST00000452182 GABRG3Q99928 467 aa11.79□□□□□ -0.52
SCN9A-204ENST00000452182 FERMT1Q9BQL6 677 aa11.79□□□□□ -0.52
SCN9A-204ENST00000452182 IER2Q9BTL4 223 aa11.79□□□□□ -0.52
SCN9A-204ENST00000452182 MFSD1Q9H3U5 465 aa11.79□□□□□ -0.52
SCN9A-204ENST00000452182 SLCO3A1Q9UIG8 710 aa11.79□□□□□ -0.52
SCN9A-204ENST00000452182 CDC23Q9UJX2 597 aa11.79□□□□□ -0.52
SCN9A-204ENST00000452182 SLC8A2Q9UPR5 921 aa11.79□□□□□ -0.52
SCN9A-204ENST00000452182 MYO18AQ92614 2054 aaKnown RBP11.79□□□□□ -0.52
SCN9A-204ENST00000452182 H7C0C1 242 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 TNFRSF10AO00220 468 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 LIASO43766 372 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 ATG13O75143 517 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 ZNF821O75541 412 aaPredicted RBP11.78□□□□□ -0.52
SCN9A-204ENST00000452182 CCNB1P14635 433 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 NTSR1P30989 418 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 HSPA9P38646 679 aaKnown RBP11.78□□□□□ -0.52
SCN9A-204ENST00000452182 IL12RB1P42701 662 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 PAFAH1B1P43034 410 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 ATP5OP48047 213 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 STK19P49842 368 aaPredicted RBP11.78□□□□□ -0.52
SCN9A-204ENST00000452182 CLCN5P51795 746 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 SEC13P55735 322 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 NSUN2Q08J23 767 aaKnown RBP eCLIP11.78□□□□□ -0.52
SCN9A-204ENST00000452182 SLC10A7Q0GE19 358 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 AP1B1Q10567 949 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 BYSLQ13895 437 aaKnown RBP11.78□□□□□ -0.52
SCN9A-204ENST00000452182 LBRQ14739 615 aaKnown RBP11.78□□□□□ -0.52
SCN9A-204ENST00000452182 OASLQ15646 514 aaKnown RBP11.78□□□□□ -0.52
SCN9A-204ENST00000452182 HNRNPA1L2Q32P51 320 aaKnown RBP11.78□□□□□ -0.52
SCN9A-204ENST00000452182 FNDC3BQ53EP0 1204 aaKnown RBP11.78□□□□□ -0.52
SCN9A-204ENST00000452182 C2orf27AQ580R0 203 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 MARC1Q5VT66 337 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 CWF19L1Q69YN2 538 aaKnown RBP11.78□□□□□ -0.52
SCN9A-204ENST00000452182 HEATR6Q6AI08 1181 aaKnown RBP11.78□□□□□ -0.52
SCN9A-204ENST00000452182 BMP8AQ7Z5Y6 402 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 CHPFQ8IZ52 775 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 PCDH20Q8N6Y1 951 aaKnown RBP11.78□□□□□ -0.52
SCN9A-204ENST00000452182 PRELID2Q8N945 189 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 C12orf50Q8NA57 414 aaPredicted RBP11.78□□□□□ -0.52
SCN9A-204ENST00000452182 FRS2Q8WU20 508 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 HTR3CQ8WXA8 447 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 ZNF592Q92610 1267 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 ACOX2Q99424 681 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 IL12RB2Q99665 862 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 CHRDQ9H2X0 955 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 RBM12Q9NTZ6 932 aaKnown RBP11.78□□□□□ -0.52
SCN9A-204ENST00000452182 SEPT3Q9UH03 358 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 SUN2Q9UH99 717 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 DNPEPQ9ULA0 475 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 DRG1Q9Y295 367 aaKnown RBP11.78□□□□□ -0.52
SCN9A-204ENST00000452182 STON1Q9Y6Q2 735 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 CKAP5Q14008 2032 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 GOLGA6L10A0A0M3HER8 536 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 TARSL2A2RTX5 802 aaKnown RBP11.78□□□□□ -0.52
SCN9A-204ENST00000452182 CFAP69A5D8W1 941 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 ANTXRLA6NF34 631 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 K7ERQ8 282 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 KRIT1O00522 736 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 SMAD6O43541 496 aaKnown RBP11.78□□□□□ -0.52
SCN9A-204ENST00000452182 URI1O94763 535 aaPredicted RBP11.78□□□□□ -0.52
SCN9A-204ENST00000452182 TMCC1O94876 653 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 ITGAVP06756 1048 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 VAV1P15498 845 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 AOC1P19801 751 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 STIP1P31948 543 aaKnown RBP11.78□□□□□ -0.52
SCN9A-204ENST00000452182 CYTH1Q15438 398 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 DLG2Q15700 870 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 EOGTQ5NDL2 527 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 SDE2Q6IQ49 451 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 C22orf39Q6P5X5 142 aa11.78□□□□□ -0.52
SCN9A-204ENST00000452182 MAMSTRQ6ZN01 415 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms