RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 LRIG2O94898 1065 aa21.2■□□□□ 0.98
SDC1-205ENST00000447124 DKK1O94907 266 aa21.2■□□□□ 0.98
SDC1-205ENST00000447124 PLEKP08567 350 aaPredicted RBP21.2■□□□□ 0.98
SDC1-205ENST00000447124 SLC20A2Q08357 652 aa21.2■□□□□ 0.98
SDC1-205ENST00000447124 ARL13BQ3SXY8 428 aa21.2■□□□□ 0.98
SDC1-205ENST00000447124 ANO6Q4KMQ2 910 aa21.2■□□□□ 0.98
SDC1-205ENST00000447124 ARSIQ5FYB1 569 aa21.2■□□□□ 0.98
SDC1-205ENST00000447124 C22orf39Q6P5X5 142 aa21.2■□□□□ 0.98
SDC1-205ENST00000447124 MON1BQ7L1V2 547 aa21.2■□□□□ 0.98
SDC1-205ENST00000447124 TRIM69Q86WT6 500 aa21.2■□□□□ 0.98
SDC1-205ENST00000447124 SPATS2Q86XZ4 545 aaKnown RBP21.2■□□□□ 0.98
SDC1-205ENST00000447124 GATAD2AQ86YP4 633 aa21.2■□□□□ 0.98
SDC1-205ENST00000447124 C3orf20Q8ND61 904 aa21.2■□□□□ 0.98
SDC1-205ENST00000447124 CDC6Q99741 560 aa21.2■□□□□ 0.98
SDC1-205ENST00000447124 SELENOOQ9BVL4 669 aa21.2■□□□□ 0.98
SDC1-205ENST00000447124 ZMIZ1Q9ULJ6 1067 aa21.2■□□□□ 0.98
SDC1-205ENST00000447124 APOBEC2Q9Y235 224 aaKnown RBP21.2■□□□□ 0.98
SDC1-205ENST00000447124 CA5BQ9Y2D0 317 aa21.2■□□□□ 0.98
SDC1-205ENST00000447124 FARP1Q9Y4F1 1045 aaPredicted RBP21.2■□□□□ 0.98
SDC1-205ENST00000447124 KPNA3O00505 521 aaPredicted RBP21.19■□□□□ 0.98
SDC1-205ENST00000447124 DFNA5O60443 496 aa21.19■□□□□ 0.98
SDC1-205ENST00000447124 CALB1P05937 261 aa21.19■□□□□ 0.98
SDC1-205ENST00000447124 RHOQP17081 205 aa21.19■□□□□ 0.98
SDC1-205ENST00000447124 GPD1P21695 349 aa21.19■□□□□ 0.98
SDC1-205ENST00000447124 NXPH1P58417 271 aa21.19■□□□□ 0.98
SDC1-205ENST00000447124 NAPEPLDQ6IQ20 393 aa21.19■□□□□ 0.98
SDC1-205ENST00000447124 RETSATQ6NUM9 610 aa21.19■□□□□ 0.98
SDC1-205ENST00000447124 RWDD4Q6NW29 188 aaKnown RBP21.19■□□□□ 0.98
SDC1-205ENST00000447124 MFSD2AQ8NA29 543 aa21.19■□□□□ 0.98
SDC1-205ENST00000447124 BAP1Q92560 729 aa21.19■□□□□ 0.98
SDC1-205ENST00000447124 ARHGEF2Q92974 986 aaKnown RBP21.19■□□□□ 0.98
SDC1-205ENST00000447124 SKA1Q96BD8 255 aa21.19■□□□□ 0.98
SDC1-205ENST00000447124 SYT11Q9BT88 431 aa21.19■□□□□ 0.98
SDC1-205ENST00000447124 RTN4Q9NQC3 1192 aaKnown RBP21.19■□□□□ 0.98
SDC1-205ENST00000447124 SEPT11Q9NVA2 429 aaKnown RBP21.19■□□□□ 0.98
SDC1-205ENST00000447124 TAS2R14Q9NYV8 317 aa21.19■□□□□ 0.98
SDC1-205ENST00000447124 DNAI1Q9UI46 699 aa21.19■□□□□ 0.98
SDC1-205ENST00000447124 FCF1Q9Y324 198 aaKnown RBP21.19■□□□□ 0.98
SDC1-205ENST00000447124 WASF2Q9Y6W5 498 aa21.19■□□□□ 0.98
SDC1-205ENST00000447124 ASPMQ8IZT6 3477 aa21.19■□□□□ 0.98
SDC1-205ENST00000447124 KNTC1P50748 2209 aa21.19■□□□□ 0.98
SDC1-205ENST00000447124 GOLGA4Q13439 2230 aaKnown RBP21.19■□□□□ 0.98
SDC1-205ENST00000447124 RNGTTO60942 597 aaKnown RBP21.18■□□□□ 0.98
SDC1-205ENST00000447124 LEFTY1O75610 366 aa21.18■□□□□ 0.98
SDC1-205ENST00000447124 CAPNS1P04632 268 aa21.18■□□□□ 0.98
SDC1-205ENST00000447124 GRK6P43250 576 aa21.18■□□□□ 0.98
SDC1-205ENST00000447124 SERPINH1P50454 418 aaKnown RBP21.18■□□□□ 0.98
SDC1-205ENST00000447124 RPL7AP62424 266 aaKnown RBP21.18■□□□□ 0.98
SDC1-205ENST00000447124 C1QBPQ07021 282 aaKnown RBP21.18■□□□□ 0.98
SDC1-205ENST00000447124 BNIP3Q12983 259 aa21.18■□□□□ 0.98
SDC1-205ENST00000447124 PPP1R15BQ5SWA1 713 aa21.18■□□□□ 0.98
SDC1-205ENST00000447124 ACAD10Q6JQN1 1059 aa21.18■□□□□ 0.98
SDC1-205ENST00000447124 PYROXD2Q8N2H3 581 aa21.18■□□□□ 0.98
SDC1-205ENST00000447124 SAP25Q8TEE9 199 aa21.18■□□□□ 0.98
SDC1-205ENST00000447124 KLK6Q92876 244 aa21.18■□□□□ 0.98
SDC1-205ENST00000447124 VOPP1Q96AW1 172 aa21.18■□□□□ 0.98
SDC1-205ENST00000447124 PREBQ9HCU5 417 aa21.18■□□□□ 0.98
SDC1-205ENST00000447124 TMEM248Q9NWD8 314 aa21.18■□□□□ 0.98
SDC1-205ENST00000447124 PLXNB3Q9ULL4 1909 aa21.17■□□□□ 0.98
SDC1-205ENST00000447124 ARID1BQ8NFD5 2236 aaPredicted RBP21.17■□□□□ 0.98
SDC1-205ENST00000447124 GOLGA8CPA6NN73 597 aa21.17■□□□□ 0.98
SDC1-205ENST00000447124 CCP110O43303 1012 aa21.17■□□□□ 0.98
SDC1-205ENST00000447124 PRNPP04156 253 aa21.17■□□□□ 0.98
SDC1-205ENST00000447124 FERP16591 822 aa21.17■□□□□ 0.98
SDC1-205ENST00000447124 CARD16Q5EG05 197 aa21.17■□□□□ 0.98
SDC1-205ENST00000447124 ERN2Q76MJ5 926 aaKnown RBP21.17■□□□□ 0.98
SDC1-205ENST00000447124 MCOLN2Q8IZK6 566 aa21.17■□□□□ 0.98
SDC1-205ENST00000447124 GRIN3AQ8TCU5 1115 aa21.17■□□□□ 0.98
SDC1-205ENST00000447124 NTAN1Q96AB6 310 aa21.17■□□□□ 0.98
SDC1-205ENST00000447124 CCDC114Q96M63 670 aa21.17■□□□□ 0.98
SDC1-205ENST00000447124 BPIFA3Q9BQP9 254 aa21.17■□□□□ 0.98
SDC1-205ENST00000447124 CEP44Q9C0F1 390 aa21.17■□□□□ 0.98
SDC1-205ENST00000447124 GDF3Q9NR23 364 aa21.17■□□□□ 0.98
SDC1-205ENST00000447124 IL36AQ9UHA7 158 aa21.17■□□□□ 0.98
SDC1-205ENST00000447124 DMTF1Q9Y222 760 aa21.17■□□□□ 0.98
SDC1-205ENST00000447124 A0A1W2PQU0 124 aa21.16■□□□□ 0.98
SDC1-205ENST00000447124 SLC31A1O15431 190 aa21.16■□□□□ 0.98
SDC1-205ENST00000447124 TNFSF14O43557 240 aa21.16■□□□□ 0.98
SDC1-205ENST00000447124 NUDT1P36639 197 aa21.16■□□□□ 0.98
SDC1-205ENST00000447124 RXRGP48443 463 aa21.16■□□□□ 0.98
SDC1-205ENST00000447124 MAPKAPK2P49137 400 aa21.16■□□□□ 0.98
SDC1-205ENST00000447124 DNA2P51530 1060 aa21.16■□□□□ 0.98
SDC1-205ENST00000447124 ZNF143P52747 638 aaPredicted RBP21.16■□□□□ 0.98
SDC1-205ENST00000447124 OGDHQ02218 1023 aa21.16■□□□□ 0.98
SDC1-205ENST00000447124 SCAPQ12770 1279 aa21.16■□□□□ 0.98
SDC1-205ENST00000447124 SLC45A4Q5BKX6 768 aa21.16■□□□□ 0.98
SDC1-205ENST00000447124 CCNI2Q6ZMN8 369 aaPredicted RBP21.16■□□□□ 0.98
SDC1-205ENST00000447124 SLFN11Q7Z7L1 901 aa21.16■□□□□ 0.98
SDC1-205ENST00000447124 PCDH20Q8N6Y1 951 aaKnown RBP21.16■□□□□ 0.98
SDC1-205ENST00000447124 TBC1D31Q96DN5 1066 aa21.16■□□□□ 0.98
SDC1-205ENST00000447124 HEPHQ9BQS7 1158 aa21.16■□□□□ 0.98
SDC1-205ENST00000447124 HDAC8Q9BY41 377 aa21.16■□□□□ 0.98
SDC1-205ENST00000447124 RETREG1Q9H6L5 497 aa21.16■□□□□ 0.98
SDC1-205ENST00000447124 NOL6Q9H6R4 1146 aaKnown RBP21.16■□□□□ 0.98
SDC1-205ENST00000447124 ERVMER34-1Q9H9K5 563 aa21.16■□□□□ 0.98
SDC1-205ENST00000447124 ZFR2Q9UPR6 939 aaKnown RBP21.16■□□□□ 0.98
SDC1-205ENST00000447124 ZZEF1O43149 2961 aa21.15■□□□□ 0.98
SDC1-205ENST00000447124 CFAP47Q6ZTR5 3102 aa21.15■□□□□ 0.98
SDC1-205ENST00000447124 PRAMEF26H0Y7S4 382 aa21.15■□□□□ 0.98
SDC1-205ENST00000447124 TAF4O00268 1085 aa21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms