RNA–Protein interactions for RNA: ENST00000442201.6

CCDC39-201, Transcript of coiled-coil domain containing 39, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC39, Length 3,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-201ENST00000442201 RETREG1Q9H6L5 497 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 HCFC1R1Q9NWW0 138 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 ZDHHC7Q9NXF8 308 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 LSM7Q9UK45 103 aaKnown RBP8.25□□□□□ -1.09
CCDC39-201ENST00000442201 TRHDEQ9UKU6 1024 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 HCFC2Q9Y5Z7 792 aa8.25□□□□□ -1.09
CCDC39-201ENST00000442201 TCRBV7S3A2A0A539 114 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 ARHGAP42A6NI28 874 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 RAMP2O60895 175 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 KRT38O76015 456 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 GJA1P17302 382 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 PTPN3P26045 913 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 OR1E1P30953 314 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 SLC6A4P31645 630 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 MAGEA6P43360 314 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 SLC7A9P82251 487 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 SEMA5AQ13591 1074 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 PARP6Q2NL67 630 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 TIGD7Q6NT04 549 aaPredicted RBP8.24□□□□□ -1.09
CCDC39-201ENST00000442201 LRIG3Q6UXM1 1119 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 TLE6Q9H808 572 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 SAYSD1Q9NPB0 183 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 CEP290O15078 2479 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 RIPK2O43353 540 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 MAFKO60675 156 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 JCHAINP01591 159 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 MAGEA4P43358 317 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 YBEYP58557 167 aaPredicted RBP8.24□□□□□ -1.09
CCDC39-201ENST00000442201 MRPS35P82673 323 aaKnown RBP8.24□□□□□ -1.09
CCDC39-201ENST00000442201 SLC29A2Q14542 456 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 SPRED3Q2MJR0 410 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 TEX44Q53QW1 395 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 ITPRIPL1Q6GPH6 555 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 CCDC121Q6ZUS5 278 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 CIR1Q86X95 450 aaPredicted RBP8.24□□□□□ -1.09
CCDC39-201ENST00000442201 SLC15A3Q8IY34 581 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 CFAP52Q8N1V2 620 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 TTC16Q8NEE8 873 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 WBP2Q969T9 261 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 MYEOVQ96EZ4 313 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 OSBPL1AQ9BXW6 950 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 NOL6Q9H6R4 1146 aaKnown RBP8.24□□□□□ -1.09
CCDC39-201ENST00000442201 PIDD1Q9HB75 910 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 PREBQ9HCU5 417 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 IGSF9Q9P2J2 1179 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 DNMT3BQ9UBC3 853 aaKnown RBP8.24□□□□□ -1.09
CCDC39-201ENST00000442201 ZNF212Q9UDV6 495 aa8.24□□□□□ -1.09
CCDC39-201ENST00000442201 IPO11Q9UI26 975 aaKnown RBP8.24□□□□□ -1.09
CCDC39-201ENST00000442201 ZFP37Q9Y6Q3 630 aaPredicted RBP8.24□□□□□ -1.09
CCDC39-201ENST00000442201 RASA4BC9J798 803 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 MATN3O15232 486 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 MAP3K13O43283 966 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 RASA4O43374 803 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 TIMM44O43615 452 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 CLDN11O75508 207 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 TTC4O95801 387 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 RHOP08100 348 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 TPSB2P20231 275 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 DDX6P26196 483 aaKnown RBP eCLIP8.23□□□□□ -1.09
CCDC39-201ENST00000442201 CDH4P55283 916 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 EIF3BP55884 814 aaKnown RBP8.23□□□□□ -1.09
CCDC39-201ENST00000442201 RPS24P62847 133 aaKnown RBP8.23□□□□□ -1.09
CCDC39-201ENST00000442201 CDK16Q00536 496 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 PDIA2Q13087 525 aaKnown RBP8.23□□□□□ -1.09
CCDC39-201ENST00000442201 TPSAB1Q15661 275 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 KYNUQ16719 465 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 ANO4Q32M45 955 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 PARP15Q460N3 678 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 ARHGAP15Q53QZ3 475 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 SYCP2LQ5T4T6 812 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 GPR158Q5T848 1215 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 RNF187Q5TA31 235 aaPredicted RBP8.23□□□□□ -1.09
CCDC39-201ENST00000442201 ARHGAP36Q6ZRI8 547 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 ZNF354CQ86Y25 554 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 SHKBP1Q8TBC3 707 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 NCSTNQ92542 709 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 BHMTQ93088 406 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 C9orf72Q96LT7 481 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 TEKT5Q96M29 485 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 SLC46A2Q9BY10 475 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 STOML2Q9UJZ1 356 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 L3MBTL1Q9Y468 752 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 ALOX15BO15296 676 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 ACSL3O95573 720 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 NUDT17P0C025 328 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 CCNB1P14635 433 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 PSMB4P28070 264 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 AVPR1AP37288 418 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 CCR2P41597 374 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 IFI35P80217 286 aaPredicted RBP8.23□□□□□ -1.09
CCDC39-201ENST00000442201 GAD2Q05329 585 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 ZBTB17Q13105 803 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 POLD3Q15054 466 aaPredicted RBP8.23□□□□□ -1.09
CCDC39-201ENST00000442201 BBS9Q3SYG4 887 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 STXBP5Q5T5C0 1151 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 ZNF697Q5TEC3 545 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 TTC39BQ5VTQ0 682 aaPredicted RBP8.23□□□□□ -1.09
CCDC39-201ENST00000442201 ADGRD2Q7Z7M1 963 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 ZBED8Q8IZ13 594 aa8.23□□□□□ -1.09
CCDC39-201ENST00000442201 MCUQ8NE86 351 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms