RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 RDH11Q8TC12 318 aa13.8□□□□□ -0.2
LIMS1-205ENST00000410093 PTPRN2Q92932 1015 aa13.8□□□□□ -0.2
LIMS1-205ENST00000410093 CELF6Q96J87 481 aaKnown RBP13.8□□□□□ -0.2
LIMS1-205ENST00000410093 RANBP9Q96S59 729 aa13.8□□□□□ -0.2
LIMS1-205ENST00000410093 OSER1Q9NX31 292 aa13.8□□□□□ -0.2
LIMS1-205ENST00000410093 DNAJB4Q9UDY4 337 aa13.8□□□□□ -0.2
LIMS1-205ENST00000410093 DRGXA6NNA5 263 aa13.8□□□□□ -0.2
LIMS1-205ENST00000410093 B4GALT3O60512 393 aa13.8□□□□□ -0.2
LIMS1-205ENST00000410093 PLIN3O60664 434 aa13.8□□□□□ -0.2
LIMS1-205ENST00000410093 SIN3BO75182 1162 aa13.8□□□□□ -0.2
LIMS1-205ENST00000410093 IGLV3-27P01718 113 aa13.8□□□□□ -0.2
LIMS1-205ENST00000410093 ZDHHC11BP0C7U3 371 aa13.8□□□□□ -0.2
LIMS1-205ENST00000410093 ERVK-10P10266 1014 aa13.8□□□□□ -0.2
LIMS1-205ENST00000410093 HAPLN1P10915 354 aaPredicted RBP13.8□□□□□ -0.2
LIMS1-205ENST00000410093 CPB1P15086 417 aa13.8□□□□□ -0.2
LIMS1-205ENST00000410093 TUFMP49411 452 aaKnown RBP13.8□□□□□ -0.2
LIMS1-205ENST00000410093 HK2P52789 917 aa13.8□□□□□ -0.2
LIMS1-205ENST00000410093 CRADDP78560 199 aa13.8□□□□□ -0.2
LIMS1-205ENST00000410093 BST1Q10588 318 aa13.8□□□□□ -0.2
LIMS1-205ENST00000410093 CHI3L2Q15782 390 aa13.8□□□□□ -0.2
LIMS1-205ENST00000410093 C9orf50Q5SZB4 431 aa13.8□□□□□ -0.2
LIMS1-205ENST00000410093 KIAA0408Q6ZU52 694 aa13.8□□□□□ -0.2
LIMS1-205ENST00000410093 CLNKQ7Z7G1 428 aa13.8□□□□□ -0.2
LIMS1-205ENST00000410093 WDR75Q8IWA0 830 aaKnown RBP13.8□□□□□ -0.2
LIMS1-205ENST00000410093 LMNTD2Q8IXW0 634 aa13.8□□□□□ -0.2
LIMS1-205ENST00000410093 ZNF683Q8IZ20 524 aa13.8□□□□□ -0.2
LIMS1-205ENST00000410093 LRRC43Q8N309 656 aa13.8□□□□□ -0.2
LIMS1-205ENST00000410093 DEFB123Q8N688 67 aa13.8□□□□□ -0.2
LIMS1-205ENST00000410093 DBF4BQ8NFT6 615 aa13.8□□□□□ -0.2
LIMS1-205ENST00000410093 CFAP61Q8NHU2 1237 aa13.8□□□□□ -0.2
LIMS1-205ENST00000410093 PPP1R14CQ8TAE6 165 aa13.8□□□□□ -0.2
LIMS1-205ENST00000410093 CALML6Q8TD86 181 aa13.8□□□□□ -0.2
LIMS1-205ENST00000410093 PPP4R1Q8TF05 950 aa13.8□□□□□ -0.2
LIMS1-205ENST00000410093 TSNARE1Q96NA8 513 aa13.8□□□□□ -0.2
LIMS1-205ENST00000410093 FCRL3Q96P31 734 aaPredicted RBP13.8□□□□□ -0.2
LIMS1-205ENST00000410093 TTLL2Q9BWV7 592 aa13.8□□□□□ -0.2
LIMS1-205ENST00000410093 C20orf96Q9NUD7 363 aaPredicted RBP13.8□□□□□ -0.2
LIMS1-205ENST00000410093 RBM22Q9NW64 420 aaKnown RBP eCLIP13.8□□□□□ -0.2
LIMS1-205ENST00000410093 IPO11Q9UI26 975 aaKnown RBP13.8□□□□□ -0.2
LIMS1-205ENST00000410093 SNX10Q9Y5X0 201 aa13.8□□□□□ -0.2
LIMS1-205ENST00000410093 NYNRINQ9P2P1 1898 aaKnown RBP13.79□□□□□ -0.2
LIMS1-205ENST00000410093 MTMR11A4FU01 709 aa13.79□□□□□ -0.2
LIMS1-205ENST00000410093 NBNO60934 754 aa13.79□□□□□ -0.2
LIMS1-205ENST00000410093 WFS1O76024 890 aa13.79□□□□□ -0.2
LIMS1-205ENST00000410093 HAUS5O94927 633 aa13.79□□□□□ -0.2
LIMS1-205ENST00000410093 PAPSS2O95340 614 aaPredicted RBP13.79□□□□□ -0.2
LIMS1-205ENST00000410093 CXCL10P02778 98 aa13.79□□□□□ -0.2
LIMS1-205ENST00000410093 SERPINE1P05121 402 aa13.79□□□□□ -0.2
LIMS1-205ENST00000410093 OR4Q2P0C623 313 aa13.79□□□□□ -0.2
LIMS1-205ENST00000410093 MYL4P12829 197 aa13.79□□□□□ -0.2
LIMS1-205ENST00000410093 ADRA1AP35348 466 aa13.79□□□□□ -0.2
LIMS1-205ENST00000410093 PAPOLAP51003 745 aaKnown RBP13.79□□□□□ -0.2
LIMS1-205ENST00000410093 ZBTB16Q05516 673 aa13.79□□□□□ -0.2
LIMS1-205ENST00000410093 SLC14A2Q15849 920 aa13.79□□□□□ -0.2
LIMS1-205ENST00000410093 DDR2Q16832 855 aa13.79□□□□□ -0.2
LIMS1-205ENST00000410093 FASTKD1Q53R41 847 aaKnown RBP13.79□□□□□ -0.2
LIMS1-205ENST00000410093 MS4A13Q5J8X5 152 aa13.79□□□□□ -0.2
LIMS1-205ENST00000410093 ARTNQ5T4W7 220 aa13.79□□□□□ -0.2
LIMS1-205ENST00000410093 N4BP2L1Q5TBK1 243 aaPredicted RBP13.79□□□□□ -0.2
LIMS1-205ENST00000410093 TMCO4Q5TGY1 634 aa13.79□□□□□ -0.2
LIMS1-205ENST00000410093 SNX30Q5VWJ9 437 aa13.79□□□□□ -0.2
LIMS1-205ENST00000410093 KLHDC10Q6PID8 442 aa13.79□□□□□ -0.2
LIMS1-205ENST00000410093 GALNT7Q86SF2 657 aa13.79□□□□□ -0.2
LIMS1-205ENST00000410093 TBC1D1Q86TI0 1168 aaPredicted RBP13.79□□□□□ -0.2
LIMS1-205ENST00000410093 CRIPAKQ8N1N5 446 aa13.79□□□□□ -0.2
LIMS1-205ENST00000410093 TEX26Q8N6G2 289 aa13.79□□□□□ -0.2
LIMS1-205ENST00000410093 PEX13Q92968 403 aa13.79□□□□□ -0.2
LIMS1-205ENST00000410093 AZIN2Q96A70 460 aa13.79□□□□□ -0.2
LIMS1-205ENST00000410093 SKA1Q96BD8 255 aa13.79□□□□□ -0.2
LIMS1-205ENST00000410093 ZNF599Q96NL3 588 aa13.79□□□□□ -0.2
LIMS1-205ENST00000410093 FAM167BQ9BTA0 163 aa13.79□□□□□ -0.2
LIMS1-205ENST00000410093 MCMBPQ9BTE3 642 aa13.79□□□□□ -0.2
LIMS1-205ENST00000410093 TTPALQ9BTX7 342 aa13.79□□□□□ -0.2
LIMS1-205ENST00000410093 TMEM120AQ9BXJ8 343 aa13.79□□□□□ -0.2
LIMS1-205ENST00000410093 FSD1LQ9BXM9 530 aa13.79□□□□□ -0.2
LIMS1-205ENST00000410093 MTIF3Q9H2K0 278 aaKnown RBP13.79□□□□□ -0.2
LIMS1-205ENST00000410093 RHOJQ9H4E5 214 aa13.79□□□□□ -0.2
LIMS1-205ENST00000410093 MARCH2Q9P0N8 246 aa13.79□□□□□ -0.2
LIMS1-205ENST00000410093 GMIPQ9P107 970 aa13.79□□□□□ -0.2
LIMS1-205ENST00000410093 BACE2Q9Y5Z0 518 aa13.79□□□□□ -0.2
LIMS1-205ENST00000410093 MIA3Q5JRA6 1907 aa13.78□□□□□ -0.2
LIMS1-205ENST00000410093 LAMA3Q16787 3333 aa13.78□□□□□ -0.2
LIMS1-205ENST00000410093 LTBP2Q14767 1821 aa13.78□□□□□ -0.2
LIMS1-205ENST00000410093 A0A0G2JND7 137 aa13.78□□□□□ -0.2
LIMS1-205ENST00000410093 TMEM114B3SHH9 223 aa13.78□□□□□ -0.2
LIMS1-205ENST00000410093 F8W810 466 aa13.78□□□□□ -0.2
LIMS1-205ENST00000410093 MSI1O43347 362 aaKnown RBP13.78□□□□□ -0.2
LIMS1-205ENST00000410093 ATP9BO43861 1147 aa13.78□□□□□ -0.2
LIMS1-205ENST00000410093 PROCP04070 461 aa13.78□□□□□ -0.2
LIMS1-205ENST00000410093 GALTP07902 379 aa13.78□□□□□ -0.2
LIMS1-205ENST00000410093 CSF2RAP15509 400 aa13.78□□□□□ -0.2
LIMS1-205ENST00000410093 CALB2P22676 271 aa13.78□□□□□ -0.2
LIMS1-205ENST00000410093 PTPN4P29074 926 aa13.78□□□□□ -0.2
LIMS1-205ENST00000410093 KPNA2P52292 529 aaKnown RBP13.78□□□□□ -0.2
LIMS1-205ENST00000410093 IL10RBQ08334 325 aa13.78□□□□□ -0.2
LIMS1-205ENST00000410093 ASPHQ12797 758 aa13.78□□□□□ -0.2
LIMS1-205ENST00000410093 C5orf22Q49AR2 442 aa13.78□□□□□ -0.2
LIMS1-205ENST00000410093 CERCAMQ5T4B2 595 aa13.78□□□□□ -0.2
LIMS1-205ENST00000410093 PIK3R6Q5UE93 754 aa13.78□□□□□ -0.2
LIMS1-205ENST00000410093 MARC1Q5VT66 337 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms