RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 K7ERQ8 282 aa13.71□□□□□ -0.21
VCX3A-202ENST00000398729 CBX4O00257 560 aa13.71□□□□□ -0.21
VCX3A-202ENST00000398729 PLK4O00444 970 aa13.71□□□□□ -0.21
VCX3A-202ENST00000398729 VILLO15195 856 aa13.71□□□□□ -0.21
VCX3A-202ENST00000398729 FLRT2O43155 660 aa13.71□□□□□ -0.21
VCX3A-202ENST00000398729 TEX33O43247 280 aa13.71□□□□□ -0.21
VCX3A-202ENST00000398729 PLRG1O43660 514 aaKnown RBP13.71□□□□□ -0.21
VCX3A-202ENST00000398729 RRM1P23921 792 aa13.71□□□□□ -0.21
VCX3A-202ENST00000398729 ETFBP38117 255 aa13.71□□□□□ -0.21
VCX3A-202ENST00000398729 RECQLP46063 649 aaPredicted RBP13.71□□□□□ -0.21
VCX3A-202ENST00000398729 METAP1P53582 386 aa13.71□□□□□ -0.21
VCX3A-202ENST00000398729 HDAC4P56524 1084 aa13.71□□□□□ -0.21
VCX3A-202ENST00000398729 GNA12Q03113 381 aa13.71□□□□□ -0.21
VCX3A-202ENST00000398729 SLC20A2Q08357 652 aa13.71□□□□□ -0.21
VCX3A-202ENST00000398729 CCDC15Q0P6D6 951 aa13.71□□□□□ -0.21
VCX3A-202ENST00000398729 SUZ12Q15022 739 aaKnown RBP13.71□□□□□ -0.21
VCX3A-202ENST00000398729 POM121L1PQ3SYA9 428 aa13.71□□□□□ -0.21
VCX3A-202ENST00000398729 ARTNQ5T4W7 220 aa13.71□□□□□ -0.21
VCX3A-202ENST00000398729 RWDD4Q6NW29 188 aaKnown RBP13.71□□□□□ -0.21
VCX3A-202ENST00000398729 DNAJC24Q6P3W2 148 aa13.71□□□□□ -0.21
VCX3A-202ENST00000398729 WDR59Q6PJI9 974 aa13.71□□□□□ -0.21
VCX3A-202ENST00000398729 LINGO4Q6UY18 593 aa13.71□□□□□ -0.21
VCX3A-202ENST00000398729 PRPF39Q86UA1 669 aaKnown RBP13.71□□□□□ -0.21
VCX3A-202ENST00000398729 DRC7Q8IY82 874 aa13.71□□□□□ -0.21
VCX3A-202ENST00000398729 OR2A12Q8NGT7 310 aa13.71□□□□□ -0.21
VCX3A-202ENST00000398729 EBF2Q9HAK2 575 aa13.71□□□□□ -0.21
VCX3A-202ENST00000398729 ATP13A1Q9HD20 1204 aa13.71□□□□□ -0.21
VCX3A-202ENST00000398729 AASDHPPTQ9NRN7 309 aa13.71□□□□□ -0.21
VCX3A-202ENST00000398729 RAXQ9Y2V3 346 aa13.71□□□□□ -0.21
VCX3A-202ENST00000398729 TMEM131Q92545 1883 aa13.71□□□□□ -0.21
VCX3A-202ENST00000398729 PTPRBP23467 1997 aa13.71□□□□□ -0.22
VCX3A-202ENST00000398729 C10orf142B7Z368 130 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 SMAD6O43541 496 aaKnown RBP13.7□□□□□ -0.22
VCX3A-202ENST00000398729 LATO43561 262 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 DFNA5O60443 496 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 RTN2O75298 545 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 PRNPP04156 253 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 PLEKP08567 350 aaPredicted RBP13.7□□□□□ -0.22
VCX3A-202ENST00000398729 RHOQP17081 205 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 DESP17661 470 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 TNFAIP3P21580 790 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 GLDCP23378 1020 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 CD38P28907 300 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 CHRNA3P32297 505 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 NUDT1P36639 197 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 CTSKP43235 329 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 MAPKAPK2P49137 400 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 SERPINH1P50454 418 aaKnown RBP13.7□□□□□ -0.22
VCX3A-202ENST00000398729 CCT8P50990 548 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 PPP2CBP62714 309 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 PPP2CAP67775 309 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 CNTN1Q12860 1018 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 SLC45A4Q5BKX6 768 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 MANEALQ5VSG8 457 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 AGBL4Q5VU57 503 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 ACAD10Q6JQN1 1059 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 PPP1R2P3Q6NXS1 205 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 C22orf39Q6P5X5 142 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 DBX2Q6ZNG2 339 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 IRF2BP2Q7Z5L9 587 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 SLFN11Q7Z7L1 901 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 GLRX5Q86SX6 157 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 MARCH9Q86YJ5 346 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 CCDC185Q8N715 623 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 TMIEQ8NEW7 156 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 NTAN1Q96AB6 310 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 TBC1D31Q96DN5 1066 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 SERAC1Q96JX3 654 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 CEP44Q9C0F1 390 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 DYRK4Q9NR20 520 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 PCOLCE2Q9UKZ9 415 aa13.7□□□□□ -0.22
VCX3A-202ENST00000398729 TCRBV5S1A1TA0A578 114 aa13.69□□□□□ -0.22
VCX3A-202ENST00000398729 KPNA3O00505 521 aaPredicted RBP13.69□□□□□ -0.22
VCX3A-202ENST00000398729 KCNK3O14649 394 aa13.69□□□□□ -0.22
VCX3A-202ENST00000398729 ZMPSTE24O75844 475 aa13.69□□□□□ -0.22
VCX3A-202ENST00000398729 LRIG2O94898 1065 aa13.69□□□□□ -0.22
VCX3A-202ENST00000398729 CTSLP07711 333 aa13.69□□□□□ -0.22
VCX3A-202ENST00000398729 ZNF143P52747 638 aaPredicted RBP13.69□□□□□ -0.22
VCX3A-202ENST00000398729 KCNT1Q5JUK3 1230 aa13.69□□□□□ -0.22
VCX3A-202ENST00000398729 SCYL2Q6P3W7 929 aa13.69□□□□□ -0.22
VCX3A-202ENST00000398729 DCUN1D2Q6PH85 259 aa13.69□□□□□ -0.22
VCX3A-202ENST00000398729 NLRP14Q86W24 1093 aa13.69□□□□□ -0.22
VCX3A-202ENST00000398729 TRIM69Q86WT6 500 aa13.69□□□□□ -0.22
VCX3A-202ENST00000398729 MCOLN2Q8IZK6 566 aa13.69□□□□□ -0.22
VCX3A-202ENST00000398729 PCDH20Q8N6Y1 951 aaKnown RBP13.69□□□□□ -0.22
VCX3A-202ENST00000398729 BAP1Q92560 729 aa13.69□□□□□ -0.22
VCX3A-202ENST00000398729 MCEEQ96PE7 176 aa13.69□□□□□ -0.22
VCX3A-202ENST00000398729 TNKS2Q9H2K2 1166 aa13.69□□□□□ -0.22
VCX3A-202ENST00000398729 PREBQ9HCU5 417 aa13.69□□□□□ -0.22
VCX3A-202ENST00000398729 TMEM248Q9NWD8 314 aa13.69□□□□□ -0.22
VCX3A-202ENST00000398729 TOR4AQ9NXH8 423 aa13.69□□□□□ -0.22
VCX3A-202ENST00000398729 IL36AQ9UHA7 158 aa13.69□□□□□ -0.22
VCX3A-202ENST00000398729 DNAI1Q9UI46 699 aa13.69□□□□□ -0.22
VCX3A-202ENST00000398729 HPCAL4Q9UM19 191 aa13.69□□□□□ -0.22
VCX3A-202ENST00000398729 DMTF1Q9Y222 760 aa13.69□□□□□ -0.22
VCX3A-202ENST00000398729 TP53BP1Q12888 1972 aaPredicted RBP13.69□□□□□ -0.22
VCX3A-202ENST00000398729 A0A1B0GTH6 734 aa13.68□□□□□ -0.22
VCX3A-202ENST00000398729 CXorf51AA0A1B0GTR3 108 aa13.68□□□□□ -0.22
VCX3A-202ENST00000398729 A0A1W2PQC6 194 aa13.68□□□□□ -0.22
VCX3A-202ENST00000398729 LRRC53A6NM62 1247 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms