RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 CLMPQ9H6B4 373 aa16.5■□□□□ 0.23
CUX2-202ENST00000397643 VPS28Q9UK41 221 aa16.5■□□□□ 0.23
CUX2-202ENST00000397643 SATB2Q9UPW6 733 aa16.5■□□□□ 0.23
CUX2-202ENST00000397643 TBC1D30Q9Y2I9 924 aa16.5■□□□□ 0.23
CUX2-202ENST00000397643 TRPM6Q9BX84 2022 aa16.5■□□□□ 0.23
CUX2-202ENST00000397643 PMS2P1A4D2B8 440 aa16.49■□□□□ 0.23
CUX2-202ENST00000397643 K7ENP7 123 aa16.49■□□□□ 0.23
CUX2-202ENST00000397643 BNIP3LO60238 219 aa16.49■□□□□ 0.23
CUX2-202ENST00000397643 GGCXP38435 758 aa16.49■□□□□ 0.23
CUX2-202ENST00000397643 RP1P56715 2156 aa16.49■□□□□ 0.23
CUX2-202ENST00000397643 STX17P56962 302 aa16.49■□□□□ 0.23
CUX2-202ENST00000397643 FGL2Q14314 439 aa16.49■□□□□ 0.23
CUX2-202ENST00000397643 FZD2Q14332 565 aa16.49■□□□□ 0.23
CUX2-202ENST00000397643 TPD52L1Q16890 204 aaPredicted RBP16.49■□□□□ 0.23
CUX2-202ENST00000397643 ANO6Q4KMQ2 910 aa16.49■□□□□ 0.23
CUX2-202ENST00000397643 C3orf38Q5JPI3 329 aa16.49■□□□□ 0.23
CUX2-202ENST00000397643 OR6B2Q6IFH4 312 aa16.49■□□□□ 0.23
CUX2-202ENST00000397643 INO80CQ6PI98 192 aaPredicted RBP16.49■□□□□ 0.23
CUX2-202ENST00000397643 C14orf80Q86SX3 495 aa16.49■□□□□ 0.23
CUX2-202ENST00000397643 CHST14Q8NCH0 376 aa16.49■□□□□ 0.23
CUX2-202ENST00000397643 ZNF548Q8NEK5 533 aaPredicted RBP16.49■□□□□ 0.23
CUX2-202ENST00000397643 MAPK15Q8TD08 544 aa16.49■□□□□ 0.23
CUX2-202ENST00000397643 MED8Q96G25 268 aa16.49■□□□□ 0.23
CUX2-202ENST00000397643 BMFQ96LC9 184 aa16.49■□□□□ 0.23
CUX2-202ENST00000397643 SLC46A1Q96NT5 459 aa16.49■□□□□ 0.23
CUX2-202ENST00000397643 SLC2A13Q96QE2 648 aa16.49■□□□□ 0.23
CUX2-202ENST00000397643 PSMB7Q99436 277 aa16.49■□□□□ 0.23
CUX2-202ENST00000397643 DUSP23Q9BVJ7 150 aa16.49■□□□□ 0.23
CUX2-202ENST00000397643 FAM204AQ9H8W3 233 aa16.49■□□□□ 0.23
CUX2-202ENST00000397643 DDIT4Q9NX09 232 aa16.49■□□□□ 0.23
CUX2-202ENST00000397643 SLC12A6Q9UHW9 1150 aa16.49■□□□□ 0.23
CUX2-202ENST00000397643 VANGL2Q9ULK5 521 aa16.49■□□□□ 0.23
CUX2-202ENST00000397643 ENTPD2Q9Y5L3 495 aa16.49■□□□□ 0.23
CUX2-202ENST00000397643 HS3ST4Q9Y661 456 aa16.49■□□□□ 0.23
CUX2-202ENST00000397643 NEMP2A6NFY4 417 aa16.48■□□□□ 0.23
CUX2-202ENST00000397643 K7ERQ8 282 aa16.48■□□□□ 0.23
CUX2-202ENST00000397643 KPNA3O00505 521 aaPredicted RBP16.48■□□□□ 0.23
CUX2-202ENST00000397643 P4HA2O15460 535 aa16.48■□□□□ 0.23
CUX2-202ENST00000397643 SNAP91O60641 907 aa16.48■□□□□ 0.23
CUX2-202ENST00000397643 FGFR1OPO95684 399 aaKnown RBP16.48■□□□□ 0.23
CUX2-202ENST00000397643 KRT10P13645 584 aa16.48■□□□□ 0.23
CUX2-202ENST00000397643 NME1P15531 152 aaKnown RBP16.48■□□□□ 0.23
CUX2-202ENST00000397643 CCR1P32246 355 aa16.48■□□□□ 0.23
CUX2-202ENST00000397643 CHRNA3P32297 505 aa16.48■□□□□ 0.23
CUX2-202ENST00000397643 PDCLQ13371 301 aa16.48■□□□□ 0.23
CUX2-202ENST00000397643 C5orf22Q49AR2 442 aa16.48■□□□□ 0.23
CUX2-202ENST00000397643 KIAA1614Q5VZ46 1190 aa16.48■□□□□ 0.23
CUX2-202ENST00000397643 TTI2Q6NXR4 508 aa16.48■□□□□ 0.23
CUX2-202ENST00000397643 GUSBP11Q6P575 273 aa16.48■□□□□ 0.23
CUX2-202ENST00000397643 Q6ZSR6 202 aa16.48■□□□□ 0.23
CUX2-202ENST00000397643 C11orf57Q6ZUT1 292 aaPredicted RBP16.48■□□□□ 0.23
CUX2-202ENST00000397643 DEFB106AQ8N104 65 aa16.48■□□□□ 0.23
CUX2-202ENST00000397643 TMIEQ8NEW7 156 aa16.48■□□□□ 0.23
CUX2-202ENST00000397643 ATXN7L3BQ96GX2 97 aa16.48■□□□□ 0.23
CUX2-202ENST00000397643 MED15Q96RN5 788 aa16.48■□□□□ 0.23
CUX2-202ENST00000397643 PPP1R9BQ96SB3 815 aa16.48■□□□□ 0.23
CUX2-202ENST00000397643 ACP6Q9NPH0 428 aa16.48■□□□□ 0.23
CUX2-202ENST00000397643 DNAJC28Q9NX36 388 aa16.48■□□□□ 0.23
CUX2-202ENST00000397643 KLF15Q9UIH9 416 aa16.48■□□□□ 0.23
CUX2-202ENST00000397643 PCDHGA8Q9Y5G5 932 aa16.48■□□□□ 0.23
CUX2-202ENST00000397643 BOD1L1Q8NFC6 3051 aa16.47■□□□□ 0.23
CUX2-202ENST00000397643 AHCTF1Q8WYP5 2266 aa16.47■□□□□ 0.23
CUX2-202ENST00000397643 SYNJ2BP-COX16A0A087WUM0 186 aa16.47■□□□□ 0.23
CUX2-202ENST00000397643 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.47■□□□□ 0.23
CUX2-202ENST00000397643 POM121BA6NF01 834 aa16.47■□□□□ 0.23
CUX2-202ENST00000397643 A6NNZ2 444 aa16.47■□□□□ 0.23
CUX2-202ENST00000397643 CDRT15L2A8MXV6 281 aa16.47■□□□□ 0.23
CUX2-202ENST00000397643 CASC3O15234 703 aaKnown RBP16.47■□□□□ 0.23
CUX2-202ENST00000397643 SMAD6O43541 496 aaKnown RBP16.47■□□□□ 0.23
CUX2-202ENST00000397643 CSF2P04141 144 aa16.47■□□□□ 0.23
CUX2-202ENST00000397643 SLC2A3P11169 496 aa16.47■□□□□ 0.23
CUX2-202ENST00000397643 DUSP3P51452 185 aaPredicted RBP16.47■□□□□ 0.23
CUX2-202ENST00000397643 HNRNPKP61978 463 aaKnown RBP eCLIP16.47■□□□□ 0.23
CUX2-202ENST00000397643 ZNF177Q13360 481 aaPredicted RBP16.47■□□□□ 0.23
CUX2-202ENST00000397643 CDKN3Q16667 212 aa16.47■□□□□ 0.23
CUX2-202ENST00000397643 TPRG1LQ5T0D9 272 aa16.47■□□□□ 0.23
CUX2-202ENST00000397643 OTUD1Q5VV17 481 aaPredicted RBP16.47■□□□□ 0.23
CUX2-202ENST00000397643 ZCCHC8Q6NZY4 707 aaKnown RBP16.47■□□□□ 0.23
CUX2-202ENST00000397643 KYAT3Q6YP21 454 aaKnown RBP16.47■□□□□ 0.23
CUX2-202ENST00000397643 ERN2Q76MJ5 926 aaKnown RBP16.47■□□□□ 0.23
CUX2-202ENST00000397643 PTAR1Q7Z6K3 402 aaPredicted RBP16.47■□□□□ 0.23
CUX2-202ENST00000397643 ENOX1Q8TC92 643 aaKnown RBP16.47■□□□□ 0.23
CUX2-202ENST00000397643 CEP63Q96MT8 703 aa16.47■□□□□ 0.23
CUX2-202ENST00000397643 BPIFA3Q9BQP9 254 aa16.47■□□□□ 0.23
CUX2-202ENST00000397643 HDAC8Q9BY41 377 aa16.47■□□□□ 0.23
CUX2-202ENST00000397643 ABCG4Q9H172 646 aa16.47■□□□□ 0.23
CUX2-202ENST00000397643 TSPY26PQ9H489 355 aa16.47■□□□□ 0.23
CUX2-202ENST00000397643 COX16Q9P0S2 106 aa16.47■□□□□ 0.23
CUX2-202ENST00000397643 VPS51Q9UID3 782 aa16.47■□□□□ 0.23
CUX2-202ENST00000397643 TLN1Q9Y490 2541 aaKnown RBP16.47■□□□□ 0.23
CUX2-202ENST00000397643 SPTY2D1-AS1A0A0U1RR47 76 aa16.46■□□□□ 0.23
CUX2-202ENST00000397643 I6L893 689 aaPredicted RBP16.46■□□□□ 0.23
CUX2-202ENST00000397643 RAD51BO15315 384 aa16.46■□□□□ 0.23
CUX2-202ENST00000397643 PAGE1O75459 146 aa16.46■□□□□ 0.23
CUX2-202ENST00000397643 CLDN11O75508 207 aa16.46■□□□□ 0.23
CUX2-202ENST00000397643 CNTN5O94779 1100 aa16.46■□□□□ 0.23
CUX2-202ENST00000397643 RRM1P23921 792 aa16.46■□□□□ 0.23
CUX2-202ENST00000397643 ZNF165P49910 485 aa16.46■□□□□ 0.23
CUX2-202ENST00000397643 PDX1P52945 283 aa16.46■□□□□ 0.23
CUX2-202ENST00000397643 CDK17Q00537 523 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms