RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 ZNF846Q147U1 533 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 UBXN2BQ14CS0 331 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 PRAMEF19Q5SWL8 479 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 TTI2Q6NXR4 508 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 PSRC1Q6PGN9 363 aaPredicted RBP7.28□□□□□ -1.24
UPF2-203ENST00000397053 CRTC3Q6UUV7 619 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 NAT16Q8N8M0 369 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 CCDC54Q8NEL0 328 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 ENKURQ8TC29 256 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 CATSPER2Q96P56 530 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 SLC35C2Q9NQQ7 365 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 MAT2BQ9NZL9 334 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 OR12D3Q9UGF7 316 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 DNPEPQ9ULA0 475 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 PTPRZ1P23471 2315 aaPredicted RBP7.28□□□□□ -1.24
UPF2-203ENST00000397053 GRXCR2A6NFK2 248 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 STX16-NPEPL1H3BU86 382 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 STX16O14662 325 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 MRASO14807 208 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 BUD23O43709 281 aaKnown RBP7.28□□□□□ -1.24
UPF2-203ENST00000397053 FARP2O94887 1054 aaPredicted RBP7.28□□□□□ -1.24
UPF2-203ENST00000397053 ASGR1P07306 291 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 MGAT1P26572 445 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 KLRK1P26718 216 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 KLK7P49862 253 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 ABRQ12979 859 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 MAP2K5Q13163 448 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 GIT2Q14161 759 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 TAPT1Q6NXT6 567 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 ULK2Q8IYT8 1036 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 NKAPQ8N5F7 415 aaKnown RBP7.28□□□□□ -1.24
UPF2-203ENST00000397053 ALLCQ8N6M5 410 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 KYQ8NBH2 561 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 STAG3L4Q8TBR4 150 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 WNT8BQ93098 351 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 RHOBTB2Q9BYZ6 727 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 CDHR5Q9HBB8 845 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.28□□□□□ -1.24
UPF2-203ENST00000397053 DMGDHQ9UI17 866 aaKnown RBP7.28□□□□□ -1.24
UPF2-203ENST00000397053 GNPTGQ9UJJ9 305 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 ZNF780BQ9Y6R6 833 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 MORC2Q9Y6X9 1032 aaPredicted RBP7.28□□□□□ -1.24
UPF2-203ENST00000397053 ABCA5Q8WWZ7 1642 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 FGF10O15520 208 aaPredicted RBP7.28□□□□□ -1.24
UPF2-203ENST00000397053 TARSP26639 723 aaKnown RBP7.28□□□□□ -1.24
UPF2-203ENST00000397053 RPL9P32969 192 aaKnown RBP7.28□□□□□ -1.24
UPF2-203ENST00000397053 VHLP40337 213 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 ABL2P42684 1182 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 NR2C2P49116 596 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 FLT3LGP49771 235 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 RARRES1P49788 294 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 MRPS6P82932 125 aaKnown RBP7.28□□□□□ -1.24
UPF2-203ENST00000397053 SLC6A3Q01959 620 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 GRB10Q13322 594 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 SUZ12Q15022 739 aaKnown RBP7.28□□□□□ -1.24
UPF2-203ENST00000397053 ADRM1Q16186 407 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 CCDC153Q494R4 210 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 N4BP2L1Q5TBK1 243 aaPredicted RBP7.28□□□□□ -1.24
UPF2-203ENST00000397053 KCNT2Q6UVM3 1135 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 PRR23BQ6ZRT6 265 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 RORBQ92753 470 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 SEMA4DQ92854 862 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 KAT5Q92993 513 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 TRIM63Q969Q1 353 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 ASB2Q96Q27 587 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 SLC4A5Q9BY07 1137 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 XRN2Q9H0D6 950 aaKnown RBP eCLIP7.28□□□□□ -1.24
UPF2-203ENST00000397053 CERS4Q9HA82 394 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 COMMD9Q9P000 198 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 DLGAP2Q9P1A6 1054 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 TBC1D30Q9Y2I9 924 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 SLC27A5Q9Y2P5 690 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 TPRKBQ9Y3C4 175 aa7.28□□□□□ -1.24
UPF2-203ENST00000397053 CDC42BPGQ6DT37 1551 aa7.27□□□□□ -1.24
UPF2-203ENST00000397053 CCT8L1PA6NM43 557 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 USP27XA6NNY8 438 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 RHPN2P1A8MT19 583 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 USP12O75317 370 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 RNASEH2AO75792 299 aaKnown RBP7.27□□□□□ -1.25
UPF2-203ENST00000397053 RECQL5O94762 991 aaPredicted RBP7.27□□□□□ -1.25
UPF2-203ENST00000397053 CFIP05156 583 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 CES1P23141 567 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 SRP54P61011 504 aaKnown RBP7.27□□□□□ -1.25
UPF2-203ENST00000397053 LGALS3BPQ08380 585 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 FASTKQ14296 549 aaKnown RBP7.27□□□□□ -1.25
UPF2-203ENST00000397053 OASLQ15646 514 aaKnown RBP7.27□□□□□ -1.25
UPF2-203ENST00000397053 NDUFA9Q16795 377 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 GRTP1Q5TC63 336 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 CES3Q6UWW8 571 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 SLC30A10Q6XR72 485 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 OTOP2Q7RTS6 562 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 TAF8Q7Z7C8 310 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 ZC3H7AQ8IWR0 971 aaKnown RBP7.27□□□□□ -1.25
UPF2-203ENST00000397053 SCUBE1Q8IWY4 988 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 DAW1Q8N136 415 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 SUN3Q8TAQ9 357 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 FEM1CQ96JP0 617 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 COPS8Q99627 209 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 CDADC1Q9BWV3 514 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 RNF19AQ9NV58 838 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms