RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 ZNF460Q14592 562 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 USP10Q14694 798 aaKnown RBP12.91□□□□□ -0.34
SHMT1-205ENST00000395684 RBM44Q6ZP01 1051 aaKnown RBP12.91□□□□□ -0.34
SHMT1-205ENST00000395684 ARHGAP22Q7Z5H3 698 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 SPATA6LQ8N4H0 392 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 FAM156AQ8NDB6 213 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 STYXQ8WUJ0 223 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 OPTNQ96CV9 577 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 OSMRQ99650 979 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 IL22Q9GZX6 179 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 LRRC4Q9HBW1 653 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 NDUFA13Q9P0J0 144 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 APPL1Q9UKG1 709 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 GNEQ9Y223 722 aaKnown RBP12.91□□□□□ -0.34
SHMT1-205ENST00000395684 CDYLQ9Y232 598 aa12.91□□□□□ -0.34
SHMT1-205ENST00000395684 TCAF2A6NFQ2 919 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 ERI2A8K979 691 aaKnown RBP12.9□□□□□ -0.34
SHMT1-205ENST00000395684 TMEM233B4DJY2 109 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 DLX3O60479 287 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 GPR32O75388 356 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 DDHD2O94830 711 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 AHSGP02765 367 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 APOA4P06727 396 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 SRGAP2BP0DMP2 458 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 ME2P23368 584 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 IGFBP6P24592 240 aaPredicted RBP12.9□□□□□ -0.34
SHMT1-205ENST00000395684 TKTL1P51854 596 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 TPI1P60174 286 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 PDCD2Q16342 344 aaPredicted RBP12.9□□□□□ -0.34
SHMT1-205ENST00000395684 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.9□□□□□ -0.34
SHMT1-205ENST00000395684 C6orf52Q5T4I8 152 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 ZFP1Q6P2D0 407 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 NOTUMQ6P988 496 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 PAOXQ6QHF9 649 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 CLEC20AQ6ZU45 233 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 RDH11Q8TC12 318 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 EZH1Q92800 747 aaPredicted RBP12.9□□□□□ -0.34
SHMT1-205ENST00000395684 MPP4Q96JB8 637 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 SCYL1Q96KG9 808 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 TNIP3Q96KP6 325 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 NPAS2Q99743 824 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 UNKQ9C0B0 810 aaKnown RBP12.9□□□□□ -0.34
SHMT1-205ENST00000395684 SNX10Q9Y5X0 201 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 COPG1Q9Y678 874 aaKnown RBP12.9□□□□□ -0.34
SHMT1-205ENST00000395684 PRSS51A0A1B0GVH4 220 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 YJEFN3A6XGL0 299 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 CXCL11O14625 94 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 ACOT8O14734 319 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 SLC22A2O15244 555 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 BCAS2O75934 225 aaPredicted RBP12.9□□□□□ -0.34
SHMT1-205ENST00000395684 CD4P01730 458 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 TCN1P20061 433 aaPredicted RBP12.9□□□□□ -0.34
SHMT1-205ENST00000395684 TAF6P49848 677 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 NADK2Q4G0N4 442 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 IYDQ6PHW0 289 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 PDZD4Q76G19 769 aaPredicted RBP12.9□□□□□ -0.34
SHMT1-205ENST00000395684 CTU1Q7Z7A3 348 aaKnown RBP12.9□□□□□ -0.34
SHMT1-205ENST00000395684 ERO1BQ86YB8 467 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 TMEM126BQ8IUX1 230 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 SLC41A1Q8IVJ1 513 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 SULF1Q8IWU6 871 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 SIX6OS1Q8N1H7 587 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 GALNT4Q8N4A0 578 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 ADCY4Q8NFM4 1077 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 ZSCAN18Q8TBC5 510 aaPredicted RBP12.9□□□□□ -0.34
SHMT1-205ENST00000395684 OMDQ99983 421 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 RHOJQ9H4E5 214 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 Q9H521 79 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 EFCAB1Q9HAE3 211 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 MID2Q9UJV3 735 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 ANKRD6Q9Y2G4 727 aa12.9□□□□□ -0.34
SHMT1-205ENST00000395684 HUS1O60921 280 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 TADA2AO75478 443 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 JCHAINP01591 159 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 CAPNS1P04632 268 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 ATP6V1B1P15313 513 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 MAP3K7CLP57077 242 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 LILRA4P59901 499 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 ART3Q13508 389 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 TSTD2Q5T7W7 516 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 KIAA0319Q5VV43 1072 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 SETD3Q86TU7 594 aaPredicted RBP12.89□□□□□ -0.35
SHMT1-205ENST00000395684 CEP97Q8IW35 865 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 MFSD6LQ8IWD5 586 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 KDM1BQ8NB78 822 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 RNF217Q8TC41 542 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 KCTD13Q8WZ19 329 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 HDAC11Q96DB2 347 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 TEKT5Q96M29 485 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 GPR78Q96P69 363 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 SLC9A7Q96T83 725 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 SUDS3Q9H7L9 328 aaPredicted RBP12.89□□□□□ -0.35
SHMT1-205ENST00000395684 XPR1Q9UBH6 696 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 VTI1BQ9UEU0 232 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 BRCA1P38398 1863 aaKnown RBP12.89□□□□□ -0.35
SHMT1-205ENST00000395684 NCAM2O15394 837 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 RNASEH2AO75792 299 aaKnown RBP12.89□□□□□ -0.35
SHMT1-205ENST00000395684 CYP2C9P11712 490 aa12.89□□□□□ -0.35
SHMT1-205ENST00000395684 PTPN1P18031 435 aaKnown RBP12.89□□□□□ -0.35
SHMT1-205ENST00000395684 ADSLP30566 484 aaPredicted RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms