RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 IL22Q9GZX6 179 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 PRDM16Q9HAZ2 1276 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 CASS4Q9NQ75 786 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 TLK1Q9UKI8 766 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 G3BP2Q9UN86 482 aaKnown RBP11.32□□□□□ -0.6
TCOF1-203ENST00000394269 NUMBLQ9Y6R0 609 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 FGF10O15520 208 aaPredicted RBP11.31□□□□□ -0.6
TCOF1-203ENST00000394269 ITM2AO43736 263 aa11.31□□□□□ -0.6
TCOF1-203ENST00000394269 ANXA9O76027 345 aa11.31□□□□□ -0.6
TCOF1-203ENST00000394269 IGLV3-25P01717 112 aa11.31□□□□□ -0.6
TCOF1-203ENST00000394269 CRHR1P34998 444 aa11.31□□□□□ -0.6
TCOF1-203ENST00000394269 WNT3AP56704 352 aa11.31□□□□□ -0.6
TCOF1-203ENST00000394269 ELF3P78545 371 aaPredicted RBP11.31□□□□□ -0.6
TCOF1-203ENST00000394269 NIPAL4Q0D2K0 466 aa11.31□□□□□ -0.6
TCOF1-203ENST00000394269 THOC5Q13769 683 aaKnown RBP11.31□□□□□ -0.6
TCOF1-203ENST00000394269 IL31Q6EBC2 164 aa11.31□□□□□ -0.6
TCOF1-203ENST00000394269 NPAS4Q8IUM7 802 aa11.31□□□□□ -0.6
TCOF1-203ENST00000394269 DENND1CQ8IV53 801 aa11.31□□□□□ -0.6
TCOF1-203ENST00000394269 PAF1Q8N7H5 531 aa11.31□□□□□ -0.6
TCOF1-203ENST00000394269 ATP6V0D2Q8N8Y2 350 aa11.31□□□□□ -0.6
TCOF1-203ENST00000394269 ALDH1A2O94788 518 aa11.31□□□□□ -0.6
TCOF1-203ENST00000394269 NQO1P15559 274 aaKnown RBP11.31□□□□□ -0.6
TCOF1-203ENST00000394269 ARHGEF6Q15052 776 aa11.31□□□□□ -0.6
TCOF1-203ENST00000394269 TEDDM1Q5T9Z0 273 aa11.31□□□□□ -0.6
TCOF1-203ENST00000394269 MARK2Q7KZI7 788 aaKnown RBP11.31□□□□□ -0.6
TCOF1-203ENST00000394269 C16orf59Q7L2K0 433 aa11.31□□□□□ -0.6
TCOF1-203ENST00000394269 PTAR1Q7Z6K3 402 aaPredicted RBP11.31□□□□□ -0.6
TCOF1-203ENST00000394269 CNPY4Q8N129 248 aa11.31□□□□□ -0.6
TCOF1-203ENST00000394269 C8orf48Q96LL4 319 aa11.31□□□□□ -0.6
TCOF1-203ENST00000394269 CPNE1Q99829 537 aa11.31□□□□□ -0.6
TCOF1-203ENST00000394269 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.31□□□□□ -0.6
TCOF1-203ENST00000394269 RAMP2O60895 175 aa11.31□□□□□ -0.6
TCOF1-203ENST00000394269 GJB5O95377 273 aa11.31□□□□□ -0.6
TCOF1-203ENST00000394269 BPGMP07738 259 aa11.31□□□□□ -0.6
TCOF1-203ENST00000394269 SLC2A3P11169 496 aa11.31□□□□□ -0.6
TCOF1-203ENST00000394269 NPY2RP49146 381 aa11.31□□□□□ -0.6
TCOF1-203ENST00000394269 GPR17Q13304 367 aa11.31□□□□□ -0.6
TCOF1-203ENST00000394269 GRM3Q14832 879 aa11.31□□□□□ -0.6
TCOF1-203ENST00000394269 STEAP4Q687X5 459 aa11.31□□□□□ -0.6
TCOF1-203ENST00000394269 KCTD11Q693B1 232 aa11.31□□□□□ -0.6
TCOF1-203ENST00000394269 TMEM135Q86UB9 458 aa11.31□□□□□ -0.6
TCOF1-203ENST00000394269 LZTR1Q8N653 840 aa11.31□□□□□ -0.6
TCOF1-203ENST00000394269 PDCD6IPQ8WUM4 868 aaKnown RBP11.31□□□□□ -0.6
TCOF1-203ENST00000394269 VPS39Q96JC1 886 aa11.31□□□□□ -0.6
TCOF1-203ENST00000394269 TASP1Q9H6P5 420 aa11.31□□□□□ -0.6
TCOF1-203ENST00000394269 TRPC7Q9HCX4 862 aa11.31□□□□□ -0.6
TCOF1-203ENST00000394269 DNAJC16Q9Y2G8 782 aa11.31□□□□□ -0.6
TCOF1-203ENST00000394269 A0A0D9SEW6 157 aa11.3□□□□□ -0.6
TCOF1-203ENST00000394269 OR6C75A6NL08 312 aa11.3□□□□□ -0.6
TCOF1-203ENST00000394269 C2P06681 752 aa11.3□□□□□ -0.6
TCOF1-203ENST00000394269 DHRS4L1P0CG22 281 aa11.3□□□□□ -0.6
TCOF1-203ENST00000394269 RPS24P62847 133 aaKnown RBP11.3□□□□□ -0.6
TCOF1-203ENST00000394269 KDSRQ06136 332 aa11.3□□□□□ -0.6
TCOF1-203ENST00000394269 PTPRCAPQ14761 206 aa11.3□□□□□ -0.6
TCOF1-203ENST00000394269 SNCBQ16143 134 aa11.3□□□□□ -0.6
TCOF1-203ENST00000394269 TRIM60Q495X7 471 aa11.3□□□□□ -0.6
TCOF1-203ENST00000394269 ZNF470Q6ECI4 717 aa11.3□□□□□ -0.6
TCOF1-203ENST00000394269 RGS9BPQ6ZS82 235 aa11.3□□□□□ -0.6
TCOF1-203ENST00000394269 LINC00523Q86TU6 105 aa11.3□□□□□ -0.6
TCOF1-203ENST00000394269 NDNQ99608 321 aa11.3□□□□□ -0.6
TCOF1-203ENST00000394269 RAD54BQ9Y620 910 aa11.3□□□□□ -0.6
TCOF1-203ENST00000394269 RASSF9O75901 435 aa11.3□□□□□ -0.6
TCOF1-203ENST00000394269 DNAJC8O75937 253 aaPredicted RBP11.3□□□□□ -0.6
TCOF1-203ENST00000394269 USP1O94782 785 aa11.3□□□□□ -0.6
TCOF1-203ENST00000394269 HAUS5O94927 633 aa11.3□□□□□ -0.6
TCOF1-203ENST00000394269 UNC5CO95185 931 aa11.3□□□□□ -0.6
TCOF1-203ENST00000394269 GALNTL6Q49A17 601 aa11.3□□□□□ -0.6
TCOF1-203ENST00000394269 GRTP1Q5TC63 336 aa11.3□□□□□ -0.6
TCOF1-203ENST00000394269 SLC41A1Q8IVJ1 513 aa11.3□□□□□ -0.6
TCOF1-203ENST00000394269 ARHGAP18Q8N392 663 aa11.3□□□□□ -0.6
TCOF1-203ENST00000394269 PPHLN1Q8NEY8 458 aaKnown RBP11.3□□□□□ -0.6
TCOF1-203ENST00000394269 BLOC1S5Q8TDH9 187 aa11.3□□□□□ -0.6
TCOF1-203ENST00000394269 BTN2A3PQ96KV6 586 aa11.3□□□□□ -0.6
TCOF1-203ENST00000394269 CYP2S1Q96SQ9 504 aa11.3□□□□□ -0.6
TCOF1-203ENST00000394269 OMDQ99983 421 aa11.3□□□□□ -0.6
TCOF1-203ENST00000394269 EBF4Q9BQW3 602 aa11.3□□□□□ -0.6
TCOF1-203ENST00000394269 NOL6Q9H6R4 1146 aaKnown RBP11.3□□□□□ -0.6
TCOF1-203ENST00000394269 TXLNGQ9NUQ3 528 aa11.3□□□□□ -0.6
TCOF1-203ENST00000394269 PHF24Q9UPV7 400 aa11.3□□□□□ -0.6
TCOF1-203ENST00000394269 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.3□□□□□ -0.6
TCOF1-203ENST00000394269 L3MBTL1Q9Y468 752 aa11.3□□□□□ -0.6
TCOF1-203ENST00000394269 TDRD15B5MCY1 1934 aaKnown RBP11.3□□□□□ -0.6
TCOF1-203ENST00000394269 ERI2A8K979 691 aaKnown RBP11.29□□□□□ -0.6
TCOF1-203ENST00000394269 GLRA3O75311 464 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 AHSGP02765 367 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 ENO1P06733 434 aaKnown RBP11.29□□□□□ -0.6
TCOF1-203ENST00000394269 RENBPP51606 427 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 GEMP55040 296 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 VWA5B1Q5TIE3 1220 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 ANKS3Q6ZW76 656 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 CLNKQ7Z7G1 428 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 OR7D4Q8NG98 312 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 PPP4R1Q8TF05 950 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 TSNARE1Q96NA8 513 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 RBBP8Q99708 897 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 NMUR2Q9GZQ4 415 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 UXTQ9UBK9 157 aaPredicted RBP11.29□□□□□ -0.6
TCOF1-203ENST00000394269 DCDC2Q9UHG0 476 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 NEU3Q9UQ49 428 aa11.29□□□□□ -0.6
TCOF1-203ENST00000394269 FIS1Q9Y3D6 152 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms