RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 HACD1B0YJ81 288 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 SH3BGRLO75368 114 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 FMO4P31512 558 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 CLEC17AQ6ZS10 378 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 ARMCX6Q7L4S7 300 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 SLC9A6Q92581 669 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 MTFMTQ96DP5 389 aaKnown RBP12.62□□□□□ -0.39
VPS13A-204ENST00000376634 SEMA6AQ9H2E6 1030 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 FBXO28Q9NVF7 368 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 TFR2Q9UP52 801 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 ITGB3BPQ13352 177 aaPredicted RBP12.62□□□□□ -0.39
VPS13A-204ENST00000376634 HYIQ5T013 277 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 WDR93Q6P2C0 686 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 ATG9AQ7Z3C6 839 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 NELL1Q92832 810 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 GRIP2Q9C0E4 1043 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 IQSEC2Q5JU85 1478 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 CARNS1A5YM72 827 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 IFNA16P05015 189 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 PTENP60484 403 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 MSLNQ13421 630 aaPredicted RBP12.62□□□□□ -0.39
VPS13A-204ENST00000376634 CCNG2Q16589 344 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 RETSATQ6NUM9 610 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 DHRSXQ8N5I4 330 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 ETAA1Q9NY74 926 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 TNFSF13BQ9Y275 285 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 RBM7Q9Y580 266 aaKnown RBP12.62□□□□□ -0.39
VPS13A-204ENST00000376634 LYNP07948 512 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 UGT1A5P35504 534 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 CBX5P45973 191 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 ACSM2AQ08AH3 577 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 ACSM2BQ68CK6 577 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 ATG4CQ96DT6 458 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 SCGNO76038 276 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 CAMTA2O94983 1202 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 PGM3O95394 542 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 ANXA5P08758 320 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 ITGA2P17301 1181 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 ARMC12Q5T9G4 340 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 TMC7Q7Z402 723 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 IQCF2Q8IXL9 164 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 ZFP28Q8NHY6 868 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 TEX47Q8TBZ9 253 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 GPRC5CQ9NQ84 441 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 VPS4AQ9UN37 437 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 PLAGL2Q9UPG8 496 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 PCDHGC5Q9Y5F6 944 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 ZMYM2Q9UBW7 1377 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 PSIP1O75475 530 aaKnown RBP12.62□□□□□ -0.39
VPS13A-204ENST00000376634 SEZ6Q53EL9 994 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 GPAT3Q53EU6 434 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 FAM171A1Q5VUB5 890 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 CYP4X1Q8N118 509 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 APBA2Q99767 749 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 FAIM2Q9BWQ8 316 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 ELOVL4Q9GZR5 314 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 IL22Q9GZX6 179 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 PCDHB5Q9Y5E4 795 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 HEATR1Q9H583 2144 aaKnown RBP12.62□□□□□ -0.39
VPS13A-204ENST00000376634 KPNA3O00505 521 aaPredicted RBP12.62□□□□□ -0.39
VPS13A-204ENST00000376634 EN1Q05925 392 aaPredicted RBP12.62□□□□□ -0.39
VPS13A-204ENST00000376634 PRAMEF18Q5VWM3 479 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 AADATQ8N5Z0 425 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 NKX2-3Q8TAU0 364 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 TTLL2Q9BWV7 592 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 USP42Q9H9J4 1324 aaKnown RBP12.62□□□□□ -0.39
VPS13A-204ENST00000376634 MAGEB3O15480 346 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 PLK1P53350 603 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 AMER2Q8N7J2 671 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 ATL1Q8WXF7 558 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 ATP13A1Q9HD20 1204 aa12.62□□□□□ -0.39
VPS13A-204ENST00000376634 RPS6KA3P51812 740 aa12.61□□□□□ -0.39
VPS13A-204ENST00000376634 BCL2L1Q07817 233 aa12.61□□□□□ -0.39
VPS13A-204ENST00000376634 NANOGNBQ7Z5D8 188 aa12.61□□□□□ -0.39
VPS13A-204ENST00000376634 ZNF557Q8N988 423 aaPredicted RBP12.61□□□□□ -0.39
VPS13A-204ENST00000376634 DAGLBQ8NCG7 672 aa12.61□□□□□ -0.39
VPS13A-204ENST00000376634 KBTBD8Q8NFY9 601 aa12.61□□□□□ -0.39
VPS13A-204ENST00000376634 IKZF3Q9UKT9 509 aa12.61□□□□□ -0.39
VPS13A-204ENST00000376634 SNCAIPQ9Y6H5 919 aa12.61□□□□□ -0.39
VPS13A-204ENST00000376634 GTPBP1O00178 669 aaKnown RBP12.61□□□□□ -0.39
VPS13A-204ENST00000376634 DCXO43602 365 aa12.61□□□□□ -0.39
VPS13A-204ENST00000376634 BNC1Q01954 994 aa12.61□□□□□ -0.39
VPS13A-204ENST00000376634 ABRAXAS1Q6UWZ7 409 aa12.61□□□□□ -0.39
VPS13A-204ENST00000376634 RASSF6Q6ZTQ3 369 aa12.61□□□□□ -0.39
VPS13A-204ENST00000376634 ZNF248Q8NDW4 579 aa12.61□□□□□ -0.39
VPS13A-204ENST00000376634 FNIP1Q8TF40 1166 aa12.61□□□□□ -0.39
VPS13A-204ENST00000376634 PLOD3O60568 738 aa12.61□□□□□ -0.39
VPS13A-204ENST00000376634 GNRH1P01148 92 aa12.61□□□□□ -0.39
VPS13A-204ENST00000376634 ARF4P18085 180 aaPredicted RBP12.61□□□□□ -0.39
VPS13A-204ENST00000376634 DGKAP23743 735 aa12.61□□□□□ -0.39
VPS13A-204ENST00000376634 RRM1P23921 792 aa12.61□□□□□ -0.39
VPS13A-204ENST00000376634 OMPP47874 163 aa12.61□□□□□ -0.39
VPS13A-204ENST00000376634 RAB25P57735 213 aa12.61□□□□□ -0.39
VPS13A-204ENST00000376634 SLC34A1Q06495 639 aa12.61□□□□□ -0.39
VPS13A-204ENST00000376634 BMPR2Q13873 1038 aa12.61□□□□□ -0.39
VPS13A-204ENST00000376634 NRF1Q16656 503 aa12.61□□□□□ -0.39
VPS13A-204ENST00000376634 ZC3H7AQ8IWR0 971 aaKnown RBP12.61□□□□□ -0.39
VPS13A-204ENST00000376634 C18orf25Q96B23 403 aaPredicted RBP12.61□□□□□ -0.39
VPS13A-204ENST00000376634 CCDC177Q9NQR7 707 aaPredicted RBP12.61□□□□□ -0.39
VPS13A-204ENST00000376634 DDX43Q9NXZ2 648 aaKnown RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms