RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 ASB8Q9H765 288 aa13.88□□□□□ -0.19
COL4A1-201ENST00000375820 DNAJC18Q9H819 358 aa13.88□□□□□ -0.19
COL4A1-201ENST00000375820 TMPRSS4Q9NRS4 437 aa13.88□□□□□ -0.19
COL4A1-201ENST00000375820 COPG2Q9UBF2 871 aa13.88□□□□□ -0.19
COL4A1-201ENST00000375820 TAF4O00268 1085 aa13.88□□□□□ -0.19
COL4A1-201ENST00000375820 NCAM2O15394 837 aa13.88□□□□□ -0.19
COL4A1-201ENST00000375820 FARP2O94887 1054 aaPredicted RBP13.88□□□□□ -0.19
COL4A1-201ENST00000375820 SLC15A2Q16348 729 aa13.88□□□□□ -0.19
COL4A1-201ENST00000375820 WSCD1Q658N2 575 aa13.88□□□□□ -0.19
COL4A1-201ENST00000375820 INTS5Q6P9B9 1019 aaKnown RBP13.88□□□□□ -0.19
COL4A1-201ENST00000375820 ACTRT2Q8TDY3 377 aa13.88□□□□□ -0.19
COL4A1-201ENST00000375820 CXorf40AQ8TE69 158 aa13.88□□□□□ -0.19
COL4A1-201ENST00000375820 KAT5Q92993 513 aa13.88□□□□□ -0.19
COL4A1-201ENST00000375820 CORO1BQ9BR76 489 aa13.88□□□□□ -0.19
COL4A1-201ENST00000375820 ETNK2Q9NVF9 386 aa13.88□□□□□ -0.19
COL4A1-201ENST00000375820 TMX2Q9Y320 296 aa13.88□□□□□ -0.19
COL4A1-201ENST00000375820 NTSP30990 170 aa13.88□□□□□ -0.19
COL4A1-201ENST00000375820 EXOC3L1Q86VI1 746 aa13.88□□□□□ -0.19
COL4A1-201ENST00000375820 ZDHHC15Q96MV8 337 aa13.88□□□□□ -0.19
COL4A1-201ENST00000375820 KHDRBS3O75525 346 aaKnown RBP13.88□□□□□ -0.19
COL4A1-201ENST00000375820 ALDH5A1P51649 535 aaPredicted RBP13.88□□□□□ -0.19
COL4A1-201ENST00000375820 FSTL1Q12841 308 aa13.88□□□□□ -0.19
COL4A1-201ENST00000375820 CYP2A13Q16696 494 aa13.88□□□□□ -0.19
COL4A1-201ENST00000375820 PYDC2Q56P42 97 aa13.88□□□□□ -0.19
COL4A1-201ENST00000375820 PRMT9Q6P2P2 845 aa13.88□□□□□ -0.19
COL4A1-201ENST00000375820 HPS6Q86YV9 775 aa13.88□□□□□ -0.19
COL4A1-201ENST00000375820 SUSD6Q92537 303 aa13.88□□□□□ -0.19
COL4A1-201ENST00000375820 PIGKQ92643 395 aa13.88□□□□□ -0.19
COL4A1-201ENST00000375820 REPS1Q96D71 796 aa13.88□□□□□ -0.19
COL4A1-201ENST00000375820 TNKS2Q9H2K2 1166 aa13.88□□□□□ -0.19
COL4A1-201ENST00000375820 L1RE1Q9UN81 338 aa13.88□□□□□ -0.19
COL4A1-201ENST00000375820 AP3D1O14617 1153 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 OR10H2O60403 315 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 DBTP11182 482 aaKnown RBP13.87□□□□□ -0.19
COL4A1-201ENST00000375820 KLHL12Q53G59 568 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 IQCF2Q8IXL9 164 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 OR6K2Q8NGY2 324 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 FAM126AQ9BYI3 521 aaPredicted RBP13.87□□□□□ -0.19
COL4A1-201ENST00000375820 NUAK2Q9H093 628 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 CIDEBQ9UHD4 219 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 ANGPT4Q9Y264 503 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 NDUFS2O75306 463 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 COPZ1P61923 177 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 USP45Q70EL2 814 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 TP53INP1Q96A56 240 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 TRAPPC9Q96Q05 1148 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 ZCCHC2Q9C0B9 1178 aaKnown RBP13.87□□□□□ -0.19
COL4A1-201ENST00000375820 EML1O00423 815 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 TBL1XO60907 577 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 RECQL4O94761 1208 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 LINC00032P0C843 101 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 CDK16Q00536 496 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 MYBPC2Q14324 1141 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 ATP13A4Q4VNC1 1196 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 EIF3MQ7L2H7 374 aaKnown RBP13.87□□□□□ -0.19
COL4A1-201ENST00000375820 VPS35Q96QK1 796 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 CMTM6Q9NX76 183 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 TRIM17Q9Y577 477 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 TCEA1P23193 301 aaKnown RBP13.87□□□□□ -0.19
COL4A1-201ENST00000375820 FNBP1LQ5T0N5 605 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 CHPFQ8IZ52 775 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 DSELQ8IZU8 1212 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 NAT16Q8N8M0 369 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 GMCL1P1Q8NEA9 526 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 CDK5RAP1Q96SZ6 601 aaKnown RBP13.87□□□□□ -0.19
COL4A1-201ENST00000375820 P2RX7Q99572 595 aaKnown RBP13.87□□□□□ -0.19
COL4A1-201ENST00000375820 TRIT1Q9H3H1 467 aaKnown RBP13.87□□□□□ -0.19
COL4A1-201ENST00000375820 ABCB10Q9NRK6 738 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 OR10H1Q9Y4A9 318 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 GSAPA4D1B5 854 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 KPNA4O00629 521 aaPredicted RBP13.87□□□□□ -0.19
COL4A1-201ENST00000375820 TNFAIP8O95379 198 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 RARRES1P49788 294 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 SCRN3Q0VDG4 424 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 FAM183BPQ6ZVS7 135 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 POPDC2Q9HBU9 364 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.87□□□□□ -0.19
COL4A1-201ENST00000375820 MARCH2Q9P0N8 246 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 ANKRD6Q9Y2G4 727 aa13.87□□□□□ -0.19
COL4A1-201ENST00000375820 LIN7AO14910 233 aaPredicted RBP13.86□□□□□ -0.19
COL4A1-201ENST00000375820 AMHP03971 560 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 RPL38P63173 70 aaKnown RBP13.86□□□□□ -0.19
COL4A1-201ENST00000375820 WDR59Q6PJI9 974 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 OFCC1Q8IZS5 231 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 PTGR2Q8N8N7 351 aaPredicted RBP13.86□□□□□ -0.19
COL4A1-201ENST00000375820 RAD51AP1Q96B01 352 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 TECPR2O15040 1411 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 A0A087X0B3 334 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 A0A087X1B8 175 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 SSNA1O43805 119 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 VIL1P09327 827 aaKnown RBP13.86□□□□□ -0.19
COL4A1-201ENST00000375820 CCL23P55773 120 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 DGKZQ13574 1117 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 AGMOQ6ZNB7 445 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 TTC7BQ86TV6 843 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 TSEN2Q8NCE0 465 aaKnown RBP13.86□□□□□ -0.19
COL4A1-201ENST00000375820 GLIS3Q8NEA6 775 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 QKIQ96PU8 341 aaKnown RBP eCLIP13.86□□□□□ -0.19
COL4A1-201ENST00000375820 TINF2Q9BSI4 451 aa13.86□□□□□ -0.19
COL4A1-201ENST00000375820 CRISPLD1Q9H336 500 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms