RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 ENDOD1O94919 500 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 ELFN1P0C7U0 828 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 WASP42768 502 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 UAP1Q16222 522 aaPredicted RBP9.34□□□□□ -0.91
UPF2-202ENST00000357604 PRSS36Q5K4E3 855 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 EMC10Q5UCC4 262 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 SCD5Q86SK9 330 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 ZNF707Q96C28 371 aaPredicted RBP9.34□□□□□ -0.91
UPF2-202ENST00000357604 CSPG4P5Q96PW8 444 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 VPS45Q9NRW7 570 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 PHPT1Q9NRX4 125 aaPredicted RBP9.34□□□□□ -0.91
UPF2-202ENST00000357604 GOLGA6L7A0A1B0GV03 622 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 LRIG2O94898 1065 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 GJB6O95452 261 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 RPN2P04844 631 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 HMGA1P17096 107 aaKnown RBP9.34□□□□□ -0.91
UPF2-202ENST00000357604 GJA4P35212 333 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 CCZ1BP86790 482 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 CCZ1P86791 482 aaPredicted RBP9.34□□□□□ -0.91
UPF2-202ENST00000357604 ASPHQ12797 758 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 UGP2Q16851 508 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 KIAA1161Q6NSJ0 714 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 C22orf39Q6P5X5 142 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 OOSP2Q86WS3 158 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 TSPAN17Q96FV3 270 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 FAM167BQ9BTA0 163 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 OSBPL6Q9BZF3 934 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 CENPHQ9H3R5 247 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 HEBP1Q9NRV9 189 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 MARK1Q9P0L2 795 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 MATN3O15232 486 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 FSBPO95073 299 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 PYGMP11217 842 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 VPS41P49754 854 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 MCCD1P59942 119 aaPredicted RBP9.34□□□□□ -0.91
UPF2-202ENST00000357604 TRIM68Q6AZZ1 485 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 KLC3Q6P597 504 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 GDPD4Q6W3E5 623 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 TRIM67Q6ZTA4 783 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 PPIL6Q8IXY8 311 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 C1orf54Q8WWF1 131 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 AGAP3Q96P47 875 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 AP1M1Q9BXS5 423 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 SYNDIG1Q9H7V2 258 aa9.34□□□□□ -0.91
UPF2-202ENST00000357604 PRLRP16471 622 aa9.34□□□□□ -0.92
UPF2-202ENST00000357604 PTPN5P54829 565 aa9.34□□□□□ -0.92
UPF2-202ENST00000357604 RPL7AP62424 266 aaKnown RBP9.34□□□□□ -0.92
UPF2-202ENST00000357604 CDH17Q12864 832 aa9.34□□□□□ -0.92
UPF2-202ENST00000357604 LMAN2Q12907 356 aa9.34□□□□□ -0.92
UPF2-202ENST00000357604 EML3Q32P44 896 aa9.34□□□□□ -0.92
UPF2-202ENST00000357604 HGSNATQ68CP4 663 aa9.34□□□□□ -0.92
UPF2-202ENST00000357604 SLC44A3Q8N4M1 653 aa9.34□□□□□ -0.92
UPF2-202ENST00000357604 TAB3Q8N5C8 712 aaPredicted RBP9.34□□□□□ -0.92
UPF2-202ENST00000357604 CCDC63Q8NA47 563 aa9.34□□□□□ -0.92
UPF2-202ENST00000357604 KDM1BQ8NB78 822 aa9.34□□□□□ -0.92
UPF2-202ENST00000357604 CEP76Q8TAP6 659 aa9.34□□□□□ -0.92
UPF2-202ENST00000357604 UBLCP1Q8WVY7 318 aaPredicted RBP9.34□□□□□ -0.92
UPF2-202ENST00000357604 CCT6BQ92526 530 aa9.34□□□□□ -0.92
UPF2-202ENST00000357604 TRIM56Q9BRZ2 755 aaKnown RBP9.34□□□□□ -0.92
UPF2-202ENST00000357604 FAM126AQ9BYI3 521 aaPredicted RBP9.34□□□□□ -0.92
UPF2-202ENST00000357604 IRAK4Q9NWZ3 460 aa9.34□□□□□ -0.92
UPF2-202ENST00000357604 SNX12Q9UMY4 172 aa9.34□□□□□ -0.92
UPF2-202ENST00000357604 RALGAPA2Q2PPJ7 1873 aa9.34□□□□□ -0.92
UPF2-202ENST00000357604 HEATR9A2RTY3 570 aa9.33□□□□□ -0.92
UPF2-202ENST00000357604 SLC7A4O43246 635 aa9.33□□□□□ -0.92
UPF2-202ENST00000357604 NDUFS3O75489 264 aa9.33□□□□□ -0.92
UPF2-202ENST00000357604 SPAG6O75602 509 aa9.33□□□□□ -0.92
UPF2-202ENST00000357604 ARL1P40616 181 aaPredicted RBP9.33□□□□□ -0.92
UPF2-202ENST00000357604 PKDCCQ504Y2 493 aa9.33□□□□□ -0.92
UPF2-202ENST00000357604 ZRANB3Q5FWF4 1079 aa9.33□□□□□ -0.92
UPF2-202ENST00000357604 RNF187Q5TA31 235 aaPredicted RBP9.33□□□□□ -0.92
UPF2-202ENST00000357604 PIK3R6Q5UE93 754 aa9.33□□□□□ -0.92
UPF2-202ENST00000357604 SYCE2Q6PIF2 218 aa9.33□□□□□ -0.92
UPF2-202ENST00000357604 TMC8Q8IU68 726 aa9.33□□□□□ -0.92
UPF2-202ENST00000357604 FAM71DQ8N9W8 422 aa9.33□□□□□ -0.92
UPF2-202ENST00000357604 TERB1Q8NA31 727 aa9.33□□□□□ -0.92
UPF2-202ENST00000357604 S1PR5Q9H228 398 aa9.33□□□□□ -0.92
UPF2-202ENST00000357604 SLC32A1Q9H598 525 aa9.33□□□□□ -0.92
UPF2-202ENST00000357604 TRPV5Q9NQA5 729 aa9.33□□□□□ -0.92
UPF2-202ENST00000357604 PIGVQ9NUD9 493 aa9.33□□□□□ -0.92
UPF2-202ENST00000357604 HHLA1C9JL84 531 aa9.33□□□□□ -0.92
UPF2-202ENST00000357604 FGF1P05230 155 aa9.33□□□□□ -0.92
UPF2-202ENST00000357604 HLA-DPA1P20036 260 aa9.33□□□□□ -0.92
UPF2-202ENST00000357604 HALP42357 657 aa9.33□□□□□ -0.92
UPF2-202ENST00000357604 GLT6D1Q7Z4J2 308 aa9.33□□□□□ -0.92
UPF2-202ENST00000357604 TTC7BQ86TV6 843 aa9.33□□□□□ -0.92
UPF2-202ENST00000357604 ZNF641Q96N77 438 aaPredicted RBP9.33□□□□□ -0.92
UPF2-202ENST00000357604 PKMYT1Q99640 499 aa9.33□□□□□ -0.92
UPF2-202ENST00000357604 LTB4R2Q9NPC1 389 aa9.33□□□□□ -0.92
UPF2-202ENST00000357604 AJAP1Q9UKB5 411 aaPredicted RBP9.33□□□□□ -0.92
UPF2-202ENST00000357604 SMCHD1A6NHR9 2005 aa9.33□□□□□ -0.92
UPF2-202ENST00000357604 PTPN7P35236 360 aa9.33□□□□□ -0.92
UPF2-202ENST00000357604 GPR1P46091 355 aa9.33□□□□□ -0.92
UPF2-202ENST00000357604 DPYSL3Q14195 570 aa9.33□□□□□ -0.92
UPF2-202ENST00000357604 MYLK3Q32MK0 819 aa9.33□□□□□ -0.92
UPF2-202ENST00000357604 MRNIPQ6NTE8 343 aa9.33□□□□□ -0.92
UPF2-202ENST00000357604 TXNDC5Q8NBS9 432 aaKnown RBP9.33□□□□□ -0.92
UPF2-202ENST00000357604 ACTRT1Q8TDG2 376 aa9.33□□□□□ -0.92
UPF2-202ENST00000357604 BLOC1S5Q8TDH9 187 aa9.33□□□□□ -0.92
UPF2-202ENST00000357604 CDH19Q9H159 772 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms