RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 YARS2Q9Y2Z4 477 aaKnown RBP7.45□□□□□ -1.22
VPS13A-202ENST00000357409 A0A096LPK6 155 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 IFI35P80217 286 aaPredicted RBP7.45□□□□□ -1.22
VPS13A-202ENST00000357409 RUNX1T1Q06455 604 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 HECTD3Q5T447 861 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 ENPP7Q6UWV6 458 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 OTOP3Q7RTS5 596 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 CPA6Q8N4T0 437 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 CDYL2Q8N8U2 506 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 SMG7Q92540 1137 aaKnown RBP7.45□□□□□ -1.22
VPS13A-202ENST00000357409 SEMA3CQ99985 751 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 GGA2Q9UJY4 613 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 FAM153BP0C7A2 387 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 ZNF7P17097 686 aaPredicted RBP7.45□□□□□ -1.22
VPS13A-202ENST00000357409 GLRA2P23416 452 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 PTPN3P26045 913 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 CCINQ13939 588 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 FAM153CQ494X1 144 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 XKR6Q5GH73 641 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 FNBP1LQ5T0N5 605 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 CERCAMQ5T4B2 595 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 PHF19Q5T6S3 580 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 CATSPERGQ6ZRH7 1159 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 LRRC6Q86X45 466 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 CACTIN-AS1Q8N1I8 211 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 SHC3Q92529 594 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 AZIN2Q96A70 460 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 PAFAH2Q99487 392 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 C1orf50Q9BV19 199 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 FAM153AQ9UHL3 310 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 ERVK-7P63135 1459 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 YDJCA8MPS7 323 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 HNRNPLP14866 589 aaKnown RBP eCLIP7.45□□□□□ -1.226e-8■□□□□ 10.3
VPS13A-202ENST00000357409 GDI1P31150 447 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 ECM1Q16610 540 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 S100A13Q99584 98 aa7.45□□□□□ -1.22
VPS13A-202ENST00000357409 KCTD14Q9BQ13 255 aaPredicted RBP7.45□□□□□ -1.22
VPS13A-202ENST00000357409 FGRP09769 529 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 GKP32189 559 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 TUFMP49411 452 aaKnown RBP7.44□□□□□ -1.22
VPS13A-202ENST00000357409 AMPD2Q01433 879 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 MAP2K5Q13163 448 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 CYLC2Q14093 348 aaPredicted RBP7.44□□□□□ -1.22
VPS13A-202ENST00000357409 N4BP2L1Q5TBK1 243 aaPredicted RBP7.44□□□□□ -1.22
VPS13A-202ENST00000357409 HGSNATQ68CP4 663 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 IRGCQ6NXR0 463 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 CLIP4Q8N3C7 705 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 SLC16A10Q8TF71 515 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 PAWRQ96IZ0 340 aaKnown RBP7.44□□□□□ -1.22
VPS13A-202ENST00000357409 TBX5Q99593 518 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 CNPPD1Q9BV87 410 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 GMIPQ9P107 970 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 USP15Q9Y4E8 981 aaPredicted RBP7.44□□□□□ -1.22
VPS13A-202ENST00000357409 MATN4O95460 622 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 CDH3P22223 829 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 ICAM3P32942 547 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 TAF10Q12962 218 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 TRADDQ15628 312 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 TMEM130Q8N3G9 435 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 KIAA0895Q8NCT3 520 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 KRT35Q92764 455 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 LACRTQ9GZZ8 138 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 CDHR5Q9HBB8 845 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 GALNT8Q9NY28 637 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 PADI3Q9ULW8 664 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 TNS3Q68CZ2 1445 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 A0A0A6YYK5 440 aaPredicted RBP7.44□□□□□ -1.22
VPS13A-202ENST00000357409 USP2O75604 605 aaPredicted RBP7.44□□□□□ -1.22
VPS13A-202ENST00000357409 MT-ND1P03886 318 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 PAICSP22234 425 aaKnown RBP7.44□□□□□ -1.22
VPS13A-202ENST00000357409 PDHA2P29803 388 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 GCNT7Q6ZNI0 430 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 THAP3Q8WTV1 239 aaPredicted RBP7.44□□□□□ -1.22
VPS13A-202ENST00000357409 PHACTR1Q9C0D0 580 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 FBXW2Q9UKT8 454 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 ACOT9Q9Y305 439 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 HCRTO43612 131 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 PTPN5P54829 565 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 IL2P60568 153 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 STX5Q13190 355 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 CAPSQ13938 189 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 SEL1L3Q68CR1 1132 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 C16orf89Q6UX73 402 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 DEFB107AQ8IZN7 70 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 FNIP1Q8TF40 1166 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 ZC3H15Q8WU90 426 aaKnown RBP7.44□□□□□ -1.22
VPS13A-202ENST00000357409 POF1BQ8WVV4 589 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 NSL1Q96IY1 281 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 CEP295NLQ96MC4 621 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 WDR18Q9BV38 432 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 SDR42E2A6NKP2 422 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 PPP1R37O75864 691 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 KRT8P05787 483 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 CD72P21854 359 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 MC4RP32245 332 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 BUD31P41223 144 aaPredicted RBP7.44□□□□□ -1.22
VPS13A-202ENST00000357409 MMP13P45452 471 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 EIF1AXP47813 144 aaKnown RBP7.44□□□□□ -1.22
VPS13A-202ENST00000357409 CHRNB3Q05901 458 aa7.44□□□□□ -1.22
VPS13A-202ENST00000357409 COL9A3Q14050 684 aaPredicted RBP7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms