RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 SLC1A5Q15758 541 aa10.3□□□□□ -0.76
SYNE1-203ENST00000354674 PSMD5Q16401 504 aa10.3□□□□□ -0.76
SYNE1-203ENST00000354674 ALYREFQ86V81 257 aaKnown RBP10.3□□□□□ -0.76
SYNE1-203ENST00000354674 EXD1Q8NHP7 514 aa10.3□□□□□ -0.76
SYNE1-203ENST00000354674 TMEM169Q96HH4 297 aa10.3□□□□□ -0.76
SYNE1-203ENST00000354674 CFAP57Q96MR6 1250 aa10.3□□□□□ -0.76
SYNE1-203ENST00000354674 RBM15Q96T37 977 aaKnown RBP eCLIP10.3□□□□□ -0.76
SYNE1-203ENST00000354674 CLSTN3Q9BQT9 956 aa10.3□□□□□ -0.76
SYNE1-203ENST00000354674 FUOMA2VDF0 154 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 ADAM12O43184 909 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 ABLIM3O94929 683 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 HAPLN1P10915 354 aaPredicted RBP10.29□□□□□ -0.76
SYNE1-203ENST00000354674 IL1R2P27930 398 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 GRIK1P39086 918 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 ARL1P40616 181 aaPredicted RBP10.29□□□□□ -0.76
SYNE1-203ENST00000354674 GLUD2P49448 558 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 SF3B4Q15427 424 aaKnown RBP eCLIP10.29□□□□□ -0.76
SYNE1-203ENST00000354674 RABGAP1LQ5R372 815 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 SH3PXD2AQ5TCZ1 1133 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 XKR5Q6UX68 686 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 PRR23BQ6ZRT6 265 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 ZBED8Q8IZ13 594 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 ATG4AQ8WYN0 398 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 NDRG1Q92597 394 aaKnown RBP10.29□□□□□ -0.76
SYNE1-203ENST00000354674 POPDC2Q9HBU9 364 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 ABI2Q9NYB9 513 aaPredicted RBP10.29□□□□□ -0.76
SYNE1-203ENST00000354674 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.29□□□□□ -0.76
SYNE1-203ENST00000354674 USTQ9Y2C2 406 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 PCDHB12Q9Y5F1 795 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 FAM92AA1XBS5 289 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 WDR27A2RRH5 827 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 C3orf70A6NLC5 250 aaPredicted RBP10.29□□□□□ -0.76
SYNE1-203ENST00000354674 K7EPI3 171 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 TRUB2O95900 331 aaKnown RBP10.29□□□□□ -0.76
SYNE1-203ENST00000354674 MIPP30301 263 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 SDC4P31431 198 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 NOS2P35228 1153 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 PTPN7P35236 360 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 MSX2P35548 267 aaPredicted RBP10.29□□□□□ -0.76
SYNE1-203ENST00000354674 YWHAGP61981 247 aaKnown RBP eCLIP10.29□□□□□ -0.76
SYNE1-203ENST00000354674 CALCOCO2Q13137 446 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 TAZQ16635 292 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 C15orf59Q2T9L4 293 aaPredicted RBP10.29□□□□□ -0.76
SYNE1-203ENST00000354674 SLC25A52Q3SY17 297 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 OTUD1Q5VV17 481 aaPredicted RBP10.29□□□□□ -0.76
SYNE1-203ENST00000354674 TXNRD3NBQ6F5E7 133 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 STRADAQ7RTN6 431 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 ATAD1Q8NBU5 361 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 MAML1Q92585 1016 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 NSL1Q96IY1 281 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 NPY6RQ99463 290 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 CRISPLD1Q9H336 500 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 COMMD8Q9NX08 183 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 NEU2Q9Y3R4 380 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 GPSM3Q9Y4H4 160 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 GPC6Q9Y625 555 aaPredicted RBP10.29□□□□□ -0.76
SYNE1-203ENST00000354674 CDY1Q9Y6F8 540 aa10.29□□□□□ -0.76
SYNE1-203ENST00000354674 YJEFN3A6XGL0 299 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 FSCN2O14926 492 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 USP17L7P0C7H9 530 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 ENDOUP21128 410 aaKnown RBP10.28□□□□□ -0.76
SYNE1-203ENST00000354674 ROR1Q01973 937 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 FOLH1Q04609 750 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 MSLNQ13421 630 aaPredicted RBP10.28□□□□□ -0.76
SYNE1-203ENST00000354674 PEX6Q13608 980 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 SEPT6Q14141 434 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 EFTUD2Q15029 972 aaKnown RBP eCLIP10.28□□□□□ -0.76
SYNE1-203ENST00000354674 RAB6CQ53S08 254 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 HFE2Q6ZVN8 426 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 RCOR2Q8IZ40 523 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 ZDHHC14Q8IZN3 488 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 C12orf50Q8NA57 414 aaPredicted RBP10.28□□□□□ -0.76
SYNE1-203ENST00000354674 CMASQ8NFW8 434 aaPredicted RBP10.28□□□□□ -0.76
SYNE1-203ENST00000354674 GDPD5Q8WTR4 605 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 C10orf82Q8WW14 230 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 PGAP3Q96FM1 320 aaPredicted RBP10.28□□□□□ -0.76
SYNE1-203ENST00000354674 RAB6CQ9H0N0 254 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 ZBP1Q9H171 429 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 RRN3Q9NYV6 651 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 FNIP2Q9P278 1114 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 ADAMTS6Q9UKP5 1117 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 USP18Q9UMW8 372 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 A0A1W2PPM1 405 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 SPECC1L-ADORA2AF8WAN1 911 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 FGF18O76093 207 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 KRT7P08729 469 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 CPB1P15086 417 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 TFE3P19532 575 aaPredicted RBP10.28□□□□□ -0.76
SYNE1-203ENST00000354674 ARSEP51690 589 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 CHN2P52757 468 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 HADHQ16836 314 aaKnown RBP10.28□□□□□ -0.76
SYNE1-203ENST00000354674 ATP13A4Q4VNC1 1196 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 PPP6R3Q5H9R7 873 aaPredicted RBP10.28□□□□□ -0.76
SYNE1-203ENST00000354674 FAM209AQ5JX71 171 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 TPGS2Q68CL5 300 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 DEFB106AQ8N104 65 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 DEPDC4Q8N2C3 294 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.28□□□□□ -0.76
SYNE1-203ENST00000354674 TTC9BQ8N6N2 239 aa10.28□□□□□ -0.76
SYNE1-203ENST00000354674 SCAMP5Q8TAC9 235 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms