RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 PAMR1Q6UXH9 720 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 MAFIPQ8WZ33 124 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 ART4Q93070 314 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 NODALQ96S42 347 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 SHCBP1LQ9BZQ2 653 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 DPY30Q9C005 99 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 EXD2Q9NVH0 621 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 OPLAHO14841 1288 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 FBXO21O94952 628 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 SKP1P63208 163 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 FAM180AQ6UWF9 173 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 EIF2AK1Q9BQI3 630 aaKnown RBP12.75□□□□□ -0.37
COL6A3-203ENST00000353578 SLC39A3Q9BRY0 314 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 NT5C1AQ9BXI3 368 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 PSME2Q9UL46 239 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 MAGED1Q9Y5V3 778 aaPredicted RBP12.75□□□□□ -0.37
COL6A3-203ENST00000353578 C8BP07358 591 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 PNPLA4P41247 253 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 RORCP51449 518 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 MPP1Q00013 466 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 NR6A1Q15406 480 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 ULK3Q6PHR2 472 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 DEF8Q6ZN54 512 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 CYB5R4Q7L1T6 521 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 LRRC19Q9H756 370 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 SLC38A7Q9NVC3 462 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 KBTBD4Q9NVX7 518 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 PCDHGB6Q9Y5F9 930 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 SLC15A1P46059 708 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 TBRG1Q3YBR2 411 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 ALFQ53S48 1182 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 FAXCQ5TGI0 409 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 ARHGAP36Q6ZRI8 547 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 PHF10Q8WUB8 498 aaKnown RBP12.75□□□□□ -0.37
COL6A3-203ENST00000353578 IL22Q9GZX6 179 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 COPZ2Q9P299 210 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 RCOR3Q9P2K3 495 aaPredicted RBP12.75□□□□□ -0.37
COL6A3-203ENST00000353578 RPS6KB2Q9UBS0 482 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 LGALS13Q9UHV8 139 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 SLIT1O75093 1534 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 TEX51A0A1B0GUA7 166 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 PLEKHG3A1L390 1219 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 TSTD3H0UI37 97 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 OR6B1O95007 311 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 GABRB2P47870 512 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 CD151P48509 253 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 DDB1Q16531 1140 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 CCSAPQ6IQ19 270 aaPredicted RBP12.75□□□□□ -0.37
COL6A3-203ENST00000353578 KLHDC10Q6PID8 442 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 ZNF717Q9BY31 904 aaPredicted RBP12.75□□□□□ -0.37
COL6A3-203ENST00000353578 USP6P35125 1406 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 GLI2P10070 1586 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 AIREO43918 545 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 PRKG2Q13237 762 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 CCDC58Q4VC31 144 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 DENND5BQ6ZUT9 1274 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 OFCC1Q8IZS5 231 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 ADAM32Q8TC27 787 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 SIPA1Q96FS4 1042 aa12.75□□□□□ -0.37
COL6A3-203ENST00000353578 CCRL2O00421 344 aa12.74□□□□□ -0.37
COL6A3-203ENST00000353578 DDX3YO15523 660 aaKnown RBP12.74□□□□□ -0.37
COL6A3-203ENST00000353578 GMFGO60234 142 aa12.74□□□□□ -0.37
COL6A3-203ENST00000353578 RPS6KA4O75676 772 aa12.74□□□□□ -0.37
COL6A3-203ENST00000353578 ZNF24P17028 368 aa12.74□□□□□ -0.37
COL6A3-203ENST00000353578 ILF3Q12906 894 aaKnown RBP eCLIP12.74□□□□□ -0.37
COL6A3-203ENST00000353578 DNAJB8Q8NHS0 232 aa12.74□□□□□ -0.37
COL6A3-203ENST00000353578 TMC2Q8TDI7 906 aa12.74□□□□□ -0.37
COL6A3-203ENST00000353578 KAT2AQ92830 837 aa12.74□□□□□ -0.37
COL6A3-203ENST00000353578 CD101Q93033 1021 aa12.74□□□□□ -0.37
COL6A3-203ENST00000353578 CDK5RAP1Q96SZ6 601 aaKnown RBP12.74□□□□□ -0.37
COL6A3-203ENST00000353578 MYO5BQ9ULV0 1848 aa12.74□□□□□ -0.37
COL6A3-203ENST00000353578 ADAMDEC1O15204 470 aa12.74□□□□□ -0.37
COL6A3-203ENST00000353578 OR7A10O76100 309 aa12.74□□□□□ -0.37
COL6A3-203ENST00000353578 CD4P01730 458 aa12.74□□□□□ -0.37
COL6A3-203ENST00000353578 MAZP56270 477 aaKnown RBP12.74□□□□□ -0.37
COL6A3-203ENST00000353578 SH3D19Q5HYK7 790 aa12.74□□□□□ -0.37
COL6A3-203ENST00000353578 CLPBQ9H078 707 aa12.74□□□□□ -0.37
COL6A3-203ENST00000353578 PRDM5Q9NQX1 630 aaPredicted RBP12.74□□□□□ -0.37
COL6A3-203ENST00000353578 INTS10Q9NVR2 710 aaKnown RBP12.74□□□□□ -0.37
COL6A3-203ENST00000353578 KCNE2Q9Y6J6 123 aa12.74□□□□□ -0.37
COL6A3-203ENST00000353578 RP2O75695 350 aa12.74□□□□□ -0.37
COL6A3-203ENST00000353578 RALGDSQ12967 914 aa12.74□□□□□ -0.37
COL6A3-203ENST00000353578 ZZZ3Q8IYH5 903 aa12.74□□□□□ -0.37
COL6A3-203ENST00000353578 JPH1Q9HDC5 661 aaPredicted RBP12.74□□□□□ -0.37
COL6A3-203ENST00000353578 PSIP1O75475 530 aaKnown RBP12.74□□□□□ -0.37
COL6A3-203ENST00000353578 RB1P06400 928 aa12.74□□□□□ -0.37
COL6A3-203ENST00000353578 FOSL2P15408 326 aa12.74□□□□□ -0.37
COL6A3-203ENST00000353578 PCID2Q5JVF3 399 aa12.74□□□□□ -0.37
COL6A3-203ENST00000353578 PTF1AQ7RTS3 328 aa12.74□□□□□ -0.37
COL6A3-203ENST00000353578 WDR49Q8IV35 697 aa12.74□□□□□ -0.37
COL6A3-203ENST00000353578 ACTR6Q9GZN1 396 aa12.74□□□□□ -0.37
COL6A3-203ENST00000353578 SYNDIG1Q9H7V2 258 aa12.74□□□□□ -0.37
COL6A3-203ENST00000353578 MIEF1Q9NQG6 463 aa12.74□□□□□ -0.37
COL6A3-203ENST00000353578 RGS17Q9UGC6 210 aaPredicted RBP12.74□□□□□ -0.37
COL6A3-203ENST00000353578 FEM1BQ9UK73 627 aa12.74□□□□□ -0.37
COL6A3-203ENST00000353578 NLRP1Q9C000 1473 aa12.74□□□□□ -0.37
COL6A3-203ENST00000353578 SULT1E1P49888 294 aa12.74□□□□□ -0.37
COL6A3-203ENST00000353578 DLGAP5Q15398 846 aa12.74□□□□□ -0.37
COL6A3-203ENST00000353578 FUT11Q495W5 492 aa12.74□□□□□ -0.37
COL6A3-203ENST00000353578 FNDC5Q8NAU1 212 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms