RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 SNX31Q8N9S9 440 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 MFSD2AQ8NA29 543 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 PCYOX1LQ8NBM8 494 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 NETO2Q8NC67 525 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 TNIP2Q8NFZ5 429 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 TRUB1Q8WWH5 349 aaKnown RBP6.9□□□□□ -1.31
VPS39-202ENST00000348544 CASP10Q92851 521 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 TOP1MTQ969P6 601 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 PPWD1Q96BP3 646 aaKnown RBP6.9□□□□□ -1.31
VPS39-202ENST00000348544 CCDC97Q96F63 343 aaPredicted RBP6.9□□□□□ -1.31
VPS39-202ENST00000348544 CERS2Q96G23 380 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 PRMT6Q96LA8 375 aaPredicted RBP6.9□□□□□ -1.31
VPS39-202ENST00000348544 QKIQ96PU8 341 aaKnown RBP eCLIP6.9□□□□□ -1.31
VPS39-202ENST00000348544 CPNE1Q99829 537 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 ADI1Q9BV57 179 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 CEP41Q9BYV8 373 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 UNC93B1Q9H1C4 597 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 PORCNQ9H237 461 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 VPS33BQ9H267 617 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 NMRAL1Q9HBL8 299 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 NGRNQ9NPE2 291 aaKnown RBP6.9□□□□□ -1.31
VPS39-202ENST00000348544 RIC8BQ9NVN3 520 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 CACNA2D2Q9NY47 1150 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 UTP6Q9NYH9 597 aaKnown RBP6.9□□□□□ -1.31
VPS39-202ENST00000348544 CD300AQ9UGN4 299 aa6.9□□□□□ -1.31
VPS39-202ENST00000348544 FAM149AA5PLN7 773 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 CFAP99D6REC4 459 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 G3V3G9 751 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 MED7O43513 233 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 SNAP91O60641 907 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 CNOT3O75175 753 aaKnown RBP6.89□□□□□ -1.31
VPS39-202ENST00000348544 RGS20O76081 388 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 IL18RAPO95256 599 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 C2P06681 752 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 HOXC6P09630 235 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 MLNP12872 115 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 MATN1P21941 496 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 NAMPTP43490 491 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 NAGLUP54802 743 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 PTPN11Q06124 597 aaPredicted RBP6.89□□□□□ -1.31
VPS39-202ENST00000348544 DGKZQ13574 1117 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 EML3Q32P44 896 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 MAP7D1Q3KQU3 841 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 DCAF8Q5TAQ9 597 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 GRTP1Q5TC63 336 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 FAM219BQ5XKK7 198 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 TMEM214Q6NUQ4 689 aaKnown RBP6.89□□□□□ -1.31
VPS39-202ENST00000348544 C4orf22Q6V702 233 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 KCTD8Q6ZWB6 473 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 ERMP1Q7Z2K6 904 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 STRA8Q7Z7C7 330 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 TTC30AQ86WT1 665 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 MCF2L2Q86YR7 1114 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 OFCC1Q8IZS5 231 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 CANT1Q8WVQ1 401 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 STARD8Q92502 1023 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 TAMM41Q96BW9 452 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 TCF12Q99081 682 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 TDRD1Q9BXT4 1180 aaKnown RBP6.89□□□□□ -1.31
VPS39-202ENST00000348544 ACE2Q9BYF1 805 aaPredicted RBP6.89□□□□□ -1.31
VPS39-202ENST00000348544 NANOGQ9H9S0 305 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 SACM1LQ9NTJ5 587 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 GIN1Q9NXP7 522 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 TXNDC16Q9P2K2 825 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 MORF4L1Q9UBU8 362 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 SARDHQ9UL12 918 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 GIT1Q9Y2X7 761 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 PSME4Q14997 1843 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 SRCAPQ6ZRS2 3230 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 HEATR9A2RTY3 570 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 SDHDO14521 159 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 MGAMO43451 1857 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 H2AFYO75367 372 aaKnown RBP6.89□□□□□ -1.31
VPS39-202ENST00000348544 PRKAR2AP13861 404 aaKnown RBP6.89□□□□□ -1.31
VPS39-202ENST00000348544 ARL2P36404 184 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 GARSP41250 739 aaKnown RBP6.89□□□□□ -1.31
VPS39-202ENST00000348544 YAP1P46937 504 aaKnown RBP6.89□□□□□ -1.31
VPS39-202ENST00000348544 AP3M2P53677 418 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 NME5P56597 212 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 MERTKQ12866 999 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 TRAP1Q12931 704 aaKnown RBP6.89□□□□□ -1.31
VPS39-202ENST00000348544 PRKAA1Q13131 559 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 NEDD8Q15843 81 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 DUOXA2Q1HG44 320 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 SLC36A3Q495N2 470 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 BOLA3Q53S33 107 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 PITRM1Q5JRX3 1037 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 SLC27A3Q5K4L6 730 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 DEPDC1Q5TB30 811 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 REP15Q6BDI9 236 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 OR6B2Q6IFH4 312 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 ZYG11AQ6WRX3 759 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 ZNF354CQ86Y25 554 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 PELI3Q8N2H9 469 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 PIP4P2Q8N4L2 257 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 KDM1BQ8NB78 822 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 URGCPQ8TCY9 931 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 LGMNQ99538 433 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 SLC39A3Q9BRY0 314 aa6.89□□□□□ -1.31
VPS39-202ENST00000348544 ZNF670Q9BS34 389 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms